Browse Element(s) Details


OsAffx.11813.1.S1_at

Description gb:NM_190079.1
DB_XREF= gi:34907241
GEN=P0504E02.17
TID=OsAffx.11813.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0504E02.17 (P0504E02.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7117011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71100OsAffx.23995.2.S1_x_at11/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.50617.1.S2_x_at11/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.50617.1.S1_at10/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.27968.1.S1_x_at7/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.34865.2.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.1.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.2.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.1.S1_a_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.1.S1_s_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.3.S1_x_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114OsAffx.23995.1.S1_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.2.S1_x_at6/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.50617.1.S2_x_at1/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71130Os.30331.1.S1_at11/111+41493084..41494751xylanase inhibitor TAXI-III, putative, expressed
LOC_Os01g71140Os.36248.1.S1_at11/111+41496376..41497851xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71150OsAffx.26553.2.S1_at1/111+41499243..41499803hypothetical protein
LOC_Os01g71160OsAffx.23996.1.S1_at11/111+41503240..41504544xylanase inhibitor precursor, putative, expressed
LOC_Os01g71170OsAffx.11813.1.S1_at11/111+41506282..41507216expressed protein
LOC_Os01g71180OsAffx.23997.1.S1_at11/111+41510649..41513399PPR986-12, putative
LOC_Os01g71190Os.25590.1.S1_at11/111+41513875..41515630Photosystem II reaction center W protein, putative, expressed
LOC_Os01g71200Os.33686.1.S1_at11/111+41520199..41525752Ribonucleoprotein, putative, expressed
LOC_Os01g71210Os.51276.1.S1_x_at11/111+41528408..41529133expressed protein
LOC_Os01g71220Os.53646.1.S1_at10/111+41530698..41535561hydroxyproline-rich glycoprotein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11813.1.S1_at--461--4811Chr01:41506612..41506636 (25 bp)
GCTCTCGCCGGACATAATGCCGCTG
LOC_Os01g71170
OsAffx.11813.1.S1_at--100--8311Chr01:41506860..41506884 (25 bp)
GGCTAGTGGCCATGTGGTTGGTGTA
LOC_Os01g71170
OsAffx.11813.1.S1_at--127--1111Chr01:41506892..41506916 (25 bp)
AGTGGTGCAAGCGACAGCAGCTGCA
LOC_Os01g71170
OsAffx.11813.1.S1_at--494--9051Chr01:41506919..41506943 (25 bp)
TGCAGTTGCAGCCTTCGGGTTCAGT
LOC_Os01g71170
OsAffx.11813.1.S1_at--219--4311Chr01:41506930..41506954 (25 bp)
CCTTCGGGTTCAGTCGTGCAGGAAA
LOC_Os01g71170
OsAffx.11813.1.S1_at--435--8571Chr01:41506968..41506992 (25 bp)
TGGTTGGTCGGTTGGCTTTGTATTC
LOC_Os01g71170
OsAffx.11813.1.S1_at--840--6611Chr01:41506978..41507002 (25 bp)
GTTGGCTTTGTATTCTTGGCAGCAA
LOC_Os01g71170
OsAffx.11813.1.S1_at--967--6872Chr01:41506987..41507011 (25 bp)
GTATTCTTGGCAGCAAAAATTGTGA
LOC_Os01g71170
OsAffx.11813.1.S1_at--772--8991Chr01:41507009..41507033 (25 bp)
TGAAGAAATTGTTGCTTCATTTCAC
LOC_Os01g71170
OsAffx.11813.1.S1_at--239--10371Chr01:41507039..41507063 (25 bp)
TTTTTTAGCTTTCGATCTCCTGTAA
LOC_Os01g71170
OsAffx.11813.1.S1_at--578--10011Chr01:41507044..41507068 (25 bp)
TAGCTTTCGATCTCCTGTAAATTTT
LOC_Os01g71170
Target Sequence 
GCTCTCGCCGGACATAATGCCGCTGCTCCCGTCCCCGGGGCCCGACTCCGACGGCTCCGCCGAGGCGCCGTCCGACGTCA
TGCCCACCATCCCCTCCAGCCCGAGCCCGCCCAACCCCGACGCGCTCTTGCCGGACTCCGCGCTCGCCCCGTTCGGCTCC
GCGCCCGCCGTCGCCGCCCAGTCCCGCGCGCCGCCGCCGTCGACGACGACGGCGGCGGCGGCGGCGTGGGCGCTCCCCGT
GGCCGTGGGGCTAGTGGCCATGTGGTTGGTGTAGTGGGCGAGTGGTGCAAGCGACAGCAGCTGCAGCTGCAGTTGCAGCC
TTCGGGTTCAGTCGTGCAGGAAAAAAAGTTGGCCGTTGGTTGGTCGGTTGGCTTTGTATTCTTGGCAGCAAAAATTGTGA
AGAAATTGTTGCTTCATTTCACTAAATTTTTTTAGCTTTCGATCTCCTGTAAATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11813.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis