Browse Element(s) Details


Os.34865.2.S1_x_at

Description gb:AK069827.1
DB_XREF= gi:32979851
TID=Os.34865.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34865 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative disease resistance protein I2 (P0504E02.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030I06, full insert sequence.
FL= gb:AK069827.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g711146/11Leucine Rich Repeat family protein, expressed
LOC_Os01g711001/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71070Os.30593.1.S1_at10/111+41460349..41461832xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71080Os.18185.1.S1_at11/111+41466060..41467498xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71090Os.4856.1.S1_at11/111+41468853..41470301xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71100OsAffx.23995.2.S1_x_at11/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.50617.1.S2_x_at11/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.50617.1.S1_at10/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.27968.1.S1_x_at7/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.34865.2.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.1.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.2.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.1.S1_a_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.1.S1_s_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.3.S1_x_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114OsAffx.23995.1.S1_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.2.S1_x_at6/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.50617.1.S2_x_at1/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71130Os.30331.1.S1_at11/111+41493084..41494751xylanase inhibitor TAXI-III, putative, expressed
LOC_Os01g71140Os.36248.1.S1_at11/111+41496376..41497851xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71150OsAffx.26553.2.S1_at1/111+41499243..41499803hypothetical protein
LOC_Os01g71160OsAffx.23996.1.S1_at11/111+41503240..41504544xylanase inhibitor precursor, putative, expressed
LOC_Os01g71170OsAffx.11813.1.S1_at11/111+41506282..41507216expressed protein
LOC_Os01g71180OsAffx.23997.1.S1_at11/111+41510649..41513399PPR986-12, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34865.2.S1_x_at--573--6272Chr01:41488843..41488867 (25 bp)
GATGTCCTTTCTTCAGATTTCCAAG
NONE
Os.34865.2.S1_x_at--561--6531NONE
GATTTCCAAGTCTTCCATGGTTAGT
NONE
Os.34865.2.S1_x_at--303--5171Chr01:41487703..41487727 (25 bp)
GCAAGCTCACCATGCATGATTTAGT
NONE
Os.34865.2.S1_x_at--253--3171Chr01:41487660..41487684 (25 bp)
AATTGCTCCTGATGAATTCCTTGTC
NONE
Os.34865.2.S1_x_at--771--5191Chr01:41487647..41487671 (25 bp)
GAATTCCTTGTCATGGACGCTACCA
NONE
Os.34865.2.S1_x_at--592--7451Chr01:41486436..41486460 (25 bp)
GTGTCTAAATTTACCTGGCCGTGAA
LOC_Os01g71114
Os.34865.2.S1_x_at--1023--7191Chr01:41486344..41486368 (25 bp)
GTCGTGCACTGGGAATTCAACATCT
LOC_Os01g71114
Os.34865.2.S1_x_at--750--6671Chr01:41486280..41486304 (25 bp)
GTTGCGTGATATGACTGACCTTCGG
LOC_Os01g71114
Os.34865.2.S1_x_at--113--1751Chr01:41486263..41486287 (25 bp)
ACCTTCGGGAACTAACTTTGTCATG
LOC_Os01g71114
Os.34865.2.S1_x_at--900--7771Chr01:41486199..41486223 (25 bp)
GGTGCTTGAGAACCTATTACCTCCT
LOC_Os01g71114
Os.34865.2.S1_x_at--168--151Chr01:41486184..41486208 (25 bp)
ATTACCTCCTCGAACTCTTGAAAGT
LOC_Os01g71114
Target Sequence 
GATGTCCTTTCTTCAGATTTCCAAGTCTTCCATGGTTAGTCCAATGCACACCAAAGCTCCACGCAAGCTCACCATGCATG
ATTTAGTGCATGATCTCGCAACAATAATTGCTCCTGATGAATTCCTTGTCATGGACGCTACCATGCCAAATACATGGAGC
AAAGCTAATAATAAGCGTTATTGCCGACATGCACAGTTGGTCAACTACCAGAAGCAACCCAAGTTTTTCAAAGATCTACC
AAGCAAGGAACAAAAGGTGTGCTTGATAAGGCTTGGTCCATTAAAGAGTGTCTAAATTTACCTGGCCGTGAAGAACATGA
TGTACATGAGATAGAAAATGGAGAGTGTTGCAGTATAGTGGAGCTTGGGAAACTAAGTTGTCGTGCACTGGGAATTCAAC
ATCTTGAAAATGTTGAGCGGCTGGACAATGCAAGGGAAGCTAAGTTGCGTGATATGACTGACCTTCGGGAACTAACTTTG
TCATGGGGACTTGGTGGCACGAGAAATGTGGACAAGGATGAAGAGGTGCTTGAGAACCTATTACCTCCTCGAACTCTTGA
AAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34865.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis