Browse Element(s) Details


Os.4856.1.S1_at

Description gb:AK105806.1
DB_XREF= gi:32991015
TID=Os.4856.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4856 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative dermal glycoprotein precursor (P0504E02.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-B07, full insert sequence.
FL= gb:AK105806.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7109011/11xylanase inhibitor TAXI-IV, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71050Os.28078.1.S1_at11/111+41444065..41449088MSP domain containing protein, expressed
LOC_Os01g71060OsAffx.21834.1.S1_x_at11/111+41453387..41454526xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71070Os.30593.1.S1_at10/111+41460349..41461832xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71080Os.18185.1.S1_at11/111+41466060..41467498xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71090Os.4856.1.S1_at11/111+41468853..41470301xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71100OsAffx.23995.2.S1_x_at11/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.50617.1.S2_x_at11/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.50617.1.S1_at10/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.27968.1.S1_x_at7/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.34865.2.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.1.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.2.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.1.S1_a_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.1.S1_s_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.3.S1_x_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114OsAffx.23995.1.S1_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.2.S1_x_at6/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.50617.1.S2_x_at1/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71130Os.30331.1.S1_at11/111+41493084..41494751xylanase inhibitor TAXI-III, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4856.1.S1_at--575--7611Chr01:41469263..41469287 (25 bp)
GGGAACACGCGGATCGGCTACTTTG
LOC_Os01g71090
Os.4856.1.S1_at--216--471Chr01:41469251..41469275 (25 bp)
ATCGGCTACTTTGTGCCGGCGGTGA
LOC_Os01g71090
Os.4856.1.S1_at--978--4471Chr01:41469215..41469239 (25 bp)
GCCGGCGGGAAGAACTACACGATGA
LOC_Os01g71090
Os.4856.1.S1_at--758--8091Chr01:41469187..41469211 (25 bp)
GGACCAACTCGATGGTGGACGTGAA
LOC_Os01g71090
Os.4856.1.S1_at--588--8811Chr01:41469067..41469091 (25 bp)
TGTTGCTGCAGTTCGACTCGGAGAA
LOC_Os01g71090
Os.4856.1.S1_at--1123--891Chr01:41469023..41469047 (25 bp)
AGGCTGCCGTTCTACACGTCGTGCA
LOC_Os01g71090
Os.4856.1.S1_at--1047--1891Chr01:41469008..41469032 (25 bp)
ACGTCGTGCAGTAACTTCAATTTCA
LOC_Os01g71090
Os.4856.1.S1_at--217--10511Chr01:41468993..41469017 (25 bp)
TTCAATTTCACCAAGACTCAGTAGA
LOC_Os01g71090
Os.4856.1.S1_at--1021--10331Chr01:41468965..41468989 (25 bp)
TTTACTTACTTACCACTGTTTCGCG
LOC_Os01g71090
Os.4856.1.S1_at--220--10471Chr01:41468956..41468980 (25 bp)
TTACCACTGTTTCGCGGCCATGTAA
LOC_Os01g71090
Os.4856.1.S1_at--794--251Chr01:41468900..41468924 (25 bp)
ATATGCCCGTATCTGTCACCCATTT
LOC_Os01g71090
Target Sequence 
GGGAACACGCGGATCGGCTACTTTGTGCCGGCGGTGAGGCTGATGCTCGCCGGCGGGAAGAACTACACGATGACGGGGAC
CAACTCGATGGTGGACGTGAAGGGGGGCAAGGCGTGCCTGGCCTTCGTGGAGATGAAGTCCGGCGACGCCGCCAGTTCGC
CGGCGGTGATCCTCGGAGGGTTCCAGATGGAGAACATGTTGCTGCAGTTCGACTCGGAGAAGAAGCGGCTCGGGTTCGCG
AGGCTGCCGTTCTACACGTCGTGCAGTAACTTCAATTTCACCAAGACTCAGTAGATAATTTACTTACTTACCACTGTTTC
GCGGCCATGTAACTGTAACTGTAATGTCGGTGTCCGGCATGCCATATGCCCGTATCTGTCACCCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis