Browse Element(s) Details


OsAffx.21834.1.S1_x_at

Description gb:NM_190067.1
DB_XREF= gi:34907217
GEN=P0504E02.3
TID=OsAffx.21834.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative dermal glycoprotein precursor (P0504E02.3), mRNA.
PROD=putative dermal glycoprotein precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7106011/11xylanase inhibitor TAXI-IV, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71010Os.10088.1.S1_a_at11/111+41427345..41431903Lipase family protein, expressed
LOC_Os01g71020OsAffx.11810.1.S1_x_at11/111+41433477..41433785hypothetical protein
LOC_Os01g71030OsAffx.11811.1.S1_at9/111+41436399..41438452hypothetical protein
LOC_Os01g71040Os.18275.1.S1_at11/111+41438853..41441707expressed protein
LOC_Os01g71040Os.18275.1.S2_at11/111+41438853..41441707expressed protein
LOC_Os01g71050Os.28078.1.S1_at11/111+41444065..41449088MSP domain containing protein, expressed
LOC_Os01g71060OsAffx.21834.1.S1_x_at11/111+41453387..41454526xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71070Os.30593.1.S1_at10/111+41460349..41461832xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71080Os.18185.1.S1_at11/111+41466060..41467498xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71090Os.4856.1.S1_at11/111+41468853..41470301xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71100OsAffx.23995.2.S1_x_at11/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.50617.1.S2_x_at11/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.50617.1.S1_at10/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.27968.1.S1_x_at7/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.34865.2.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.1.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.2.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.1.S1_a_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21834.1.S1_x_at--356--4851Chr01:41453928..41453952 (25 bp)
GCTACCTCAGGAACCCCAAGAACGG
LOC_Os01g71060
OsAffx.21834.1.S1_x_at--485--9331Chr01:41453877..41453901 (25 bp)
TCGCCGTGAACCACCGCGGAGCGGA
LOC_Os01g71060
OsAffx.21834.1.S1_x_at--577--451Chr01:41453758..41453782 (25 bp)
ATCTACCGCGCCGTGATCGAGGCGA
LOC_Os01g71060
OsAffx.21834.1.S1_x_at--6--531Chr01:41453743..41453767 (25 bp)
ATCGAGGCGATCGACGCGGAGCTAC
LOC_Os01g71060
OsAffx.21834.1.S1_x_at--826--4031Chr01:41453688..41453712 (25 bp)
CGTTCGAGCGGTGCTACCAGAGGTC
LOC_Os01g71060
OsAffx.21834.1.S1_x_at--1032--9851Chr01:41453635..41453659 (25 bp)
TACACGGCGAGCGTCGACCTGATGC
LOC_Os01g71060
OsAffx.21834.1.S1_x_at--1101--1431Chr01:41453598..41453622 (25 bp)
AGAACTGGACGATCGTCGGCGCCAG
LOC_Os01g71060
OsAffx.21834.1.S1_x_at--447--6711Chr01:41453459..41453483 (25 bp)
GTTCGACCTGGAGAAGTGGCAGTTC
LOC_Os01g71060
OsAffx.21834.1.S1_x_at--762--1211Chr01:41453439..41453463 (25 bp)
AGTTCGGGTTCAGCGGCTTGCTACT
LOC_Os01g71060
OsAffx.21834.1.S1_x_at--1062--10711Chr01:41453422..41453446 (25 bp)
TTGCTACTCGGCACCATGACCAGGT
LOC_Os01g71060
OsAffx.21834.1.S1_x_at--150--1051Chr01:41453401..41453425 (25 bp)
AGGTGCGGCAACTTCGACTTCAGCA
LOC_Os01g71060
Target Sequence
GCTACCTCAGGAACCCCAAGAACGGCGGCTTCTACCTCGACGTCGTCGGCATCGCCGTGAACCACCGCGGAGCGGACGTG
CCCCCGGACTCCCTCGCCCTCGACGCCGGCACCGGCCACGGCGGCGTGATGCTGAGCACGGTGGCGCCGTACACCGCGCT
CCGGCCGGACATCTACCGCGCCGTGATCGAGGCGATCGACGCGGAGCTACGCCTCATCGCGCGCGCGCCGCCGTCGTGGC
CGTTCGAGCGGTGCTACCAGAGGTCGGCGATGTGGTGGACGCGCATCGGCCCGTACACGGCGAGCGTCGACCTGATGCTG
GCCGGCGGCCAGAACTGGACGATCGTCGGCGCCAGCGCCGTGGTGGAGGTGAGCCAGGAGGCGGCGTGCTTCGCGTTCGT
CGACATGGGCGCCGCGGCCGCGCCGGCGGTGATCATCGGCGGGCATCAGATGGAGGACAACCTGGTGGTGTTCGACCTGG
AGAAGTGGCAGTTCGGGTTCAGCGGCTTGCTACTCGGCACCATGACCAGGTGCGGCAACTTCGACTTCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21834.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis