Browse Element(s) Details


Os.50617.1.S1_at

Description gb:AK062872.1
DB_XREF= gi:32972890
TID=Os.50617.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-C08, full insert sequence.
FL= gb:AK106251.1 gb:AK062872.1 gb:AK122144.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7110010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71050Os.28078.1.S1_at11/111+41444065..41449088MSP domain containing protein, expressed
LOC_Os01g71060OsAffx.21834.1.S1_x_at11/111+41453387..41454526xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71070Os.30593.1.S1_at10/111+41460349..41461832xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71080Os.18185.1.S1_at11/111+41466060..41467498xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71090Os.4856.1.S1_at11/111+41468853..41470301xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71100OsAffx.23995.2.S1_x_at11/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.50617.1.S2_x_at11/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.50617.1.S1_at10/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.27968.1.S1_x_at7/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.34865.2.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.1.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.2.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.1.S1_a_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.1.S1_s_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.3.S1_x_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114OsAffx.23995.1.S1_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.2.S1_x_at6/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.50617.1.S2_x_at1/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71130Os.30331.1.S1_at11/111+41493084..41494751xylanase inhibitor TAXI-III, putative, expressed
LOC_Os01g71140Os.36248.1.S1_at11/111+41496376..41497851xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71150OsAffx.26553.2.S1_at1/111+41499243..41499803hypothetical protein
LOC_Os01g71160OsAffx.23996.1.S1_at11/111+41503240..41504544xylanase inhibitor precursor, putative, expressed
LOC_Os01g71170OsAffx.11813.1.S1_at11/111+41506282..41507216expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50617.1.S1_at--197--4431Chr01:41481450..41481474 (25 bp)
GCCATAAGGGCGGAGCGAACACACC
LOC_Os01g71100
Os.50617.1.S1_at--617--10591NONE
TTCTCCCCTCTGCAGAACGATGGAT
NONE
Os.50617.1.S1_at--1081--8911Chr01:41481344..41481368 (25 bp)
TGAGCCCTTCTATCCACAGGCGGAA
LOC_Os01g71100
Os.50617.1.S1_at--867--4551Chr01:41481304..41481328 (25 bp)
GCGCCTCGATTTCCTGGTGTTGGAA
LOC_Os01g71100
Os.50617.1.S1_at--1045--7731Chr01:41481142..41481313 (25 bp)
GGTGTTGGAATCGTCAGTCCCATTC
LOC_Os01g71100
Os.50617.1.S1_at--625--1131Chr01:41481127..41481151 (25 bp)
AGTCCCATTCCATCCGGAGGAGTAA
LOC_Os01g71100
Os.50617.1.S1_at--192--9011Chr01:41481099..41481123 (25 bp)
TGAATAGTGTGTGGTCCTCATCCTC
LOC_Os01g71100
Os.50617.1.S1_at--543--9611Chr01:41481082..41481106 (25 bp)
TCATCCTCACGCACGGGCCGGGTAA
LOC_Os01g71100
Os.50617.1.S1_at--408--7172Chr01:41490908..41490932 (25 bp)
GTCTCCATAGTCATTTCTTCTTGTT
NONE
Os.50617.1.S1_at--175--3632Chr01:41490889..41490913 (25 bp)
CTTGTTGACAGATTACCCAGGTTTC
NONE
Os.50617.1.S1_at--1116--4312Chr01:41490873..41490897 (25 bp)
CCAGGTTTCACCATTGTTTGGCTAT
NONE
Target Sequence 
GCCATAAGGGCGGAGCGAACACACCGGCGGCGAGGCGGTGAAGGGGTTGGAGGAGGCGGTCGAGCGGGTTCTCCCCTCTG
CAGAACGATGGATCGAGCCGAGCACCTTGAGCCCTTCTATCCACAGGCGGAAGTGCAGTGGCTGGCGGCGCCTCGATTTC
CTGGTGTTGGAATCGTCAGTCCCATTCCATCCGGAGGAGTAATTCTGAATAGTGTGTGGTCCTCATCCTCACGCACGGGC
CGGGTAAATCCTTCCAAAATGGATGTCTTGTAAGGCTTGAAAAGGATTCAATCTAAGGCAAGTTGTTGGATAAGTCTCCA
TAGTCATTTCTTCTTGTTGACAGATTACCCAGGTTTCACCATTGTTTGGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis