Browse Element(s) Details


Os.30331.1.S1_at

Description gb:AK108977.1
DB_XREF= gi:32994186
TID=Os.30331.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30331 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0504E02.13 (P0504E02.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-E08, full insert sequence.
FL= gb:AK108977.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7113011/11xylanase inhibitor TAXI-III, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71090Os.4856.1.S1_at11/111+41468853..41470301xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71100OsAffx.23995.2.S1_x_at11/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.50617.1.S2_x_at11/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.50617.1.S1_at10/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.27968.1.S1_x_at7/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.34865.2.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.1.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.2.S1_x_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71100Os.11330.1.S1_a_at1/111+41472312..41481519Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.1.S1_s_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.3.S1_x_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114OsAffx.23995.1.S1_at11/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.34865.2.S1_x_at6/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71114Os.50617.1.S2_x_at1/111+41482666..41487575Leucine Rich Repeat family protein, expressed
LOC_Os01g71130Os.30331.1.S1_at11/111+41493084..41494751xylanase inhibitor TAXI-III, putative, expressed
LOC_Os01g71140Os.36248.1.S1_at11/111+41496376..41497851xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71150OsAffx.26553.2.S1_at1/111+41499243..41499803hypothetical protein
LOC_Os01g71160OsAffx.23996.1.S1_at11/111+41503240..41504544xylanase inhibitor precursor, putative, expressed
LOC_Os01g71170OsAffx.11813.1.S1_at11/111+41506282..41507216expressed protein
LOC_Os01g71180OsAffx.23997.1.S1_at11/111+41510649..41513399PPR986-12, putative
LOC_Os01g71190Os.25590.1.S1_at11/111+41513875..41515630Photosystem II reaction center W protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30331.1.S1_at--640--4731Chr01:41494224..41494248 (25 bp)
GCAGTTCGAGCTTTGTTACGGCGGC
LOC_Os01g71130
Os.30331.1.S1_at--184--4591Chr01:41494247..41494271 (25 bp)
GCGCAGGCGACACCATGTTGTCATT
LOC_Os01g71130
Os.30331.1.S1_at--87--5871Chr01:41494331..41494355 (25 bp)
GAGCCACGGGTAACTGGACGATACT
LOC_Os01g71130
Os.30331.1.S1_at--1071--6471Chr01:41494350..41494374 (25 bp)
GATACTGAACGGCAACTACCTGGTA
LOC_Os01g71130
Os.30331.1.S1_at--629--9971Chr01:41494366..41494390 (25 bp)
TACCTGGTACGCGAGACGTGCGTTG
LOC_Os01g71130
Os.30331.1.S1_at--223--6411Chr01:41494486..41494510 (25 bp)
GATCTGGACAAACGCACGCTCGGCT
LOC_Os01g71130
Os.30331.1.S1_at--57--4811Chr01:41494503..41494527 (25 bp)
GCTCGGCTTCAGCAGGCTATTGGAA
LOC_Os01g71130
Os.30331.1.S1_at--439--5291Chr01:41494525..41494549 (25 bp)
GAATGGGACCTGACGAATTGTTACA
LOC_Os01g71130
Os.30331.1.S1_at--495--351Chr01:41494571..41494595 (25 bp)
ATAACTTTATCGTGTCTCAGGCGTT
LOC_Os01g71130
Os.30331.1.S1_at--66--911Chr01:41494589..41494613 (25 bp)
AGGCGTTTTCCAATTTCCAGTGCTT
LOC_Os01g71130
Os.30331.1.S1_at--234--3891Chr01:41494662..41494686 (25 bp)
CTGTCACGTACCAGCCTTGATGAAT
LOC_Os01g71130
Target Sequence 
GCAGTTCGAGCTTTGTTACGGCGGCGCAGGCGACACCATGTTGTCATTCCCTATGATGAAGCGGACGGGCTTCGACGCGC
CGGCGATCACCCTGGAGNTGGACGCCGGAGCCACGGGTAACTGGACGATACTGAACGGCAACTACCTGGTACGCGAGACG
TGCGTTGGGGTCGTGGAGATGGGGCCGGAAGGCATGCCGGTGGACGGCGAGCCGGCGGTGGTGCTCGGCGGGATGCAGTT
GGAGAACATCCTGATGGTGTTCGATCTGGACAAACGCACGCTCGGCTTCAGCAGGCTATTGGAATGGGACCTGACGAATT
GTTACAGCGCAAGCTTTTTGTGAGGAAATAACTTTATCGTGTCTCAGGCGTTTTCCAATTTCCAGTGCTTGTAGTCATTG
TACTCAAACTTGAGTAGTATACATTGGAACAGAATAAGCTGTCACGTACCAGCCTTGATGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis