Browse Element(s) Details


Os.25590.1.S1_at

Description gb:CB680541
DB_XREF= gi:29684266
DB_XREF=OSJNEf05H24.f
CLONE=OSJNEf05H24
TID=Os.25590.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25590 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) photosystem II protein W-like protein (P0504E02.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7119011/11Photosystem II reaction center W protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71130Os.30331.1.S1_at11/111+41493084..41494751xylanase inhibitor TAXI-III, putative, expressed
LOC_Os01g71140Os.36248.1.S1_at11/111+41496376..41497851xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71150OsAffx.26553.2.S1_at1/111+41499243..41499803hypothetical protein
LOC_Os01g71160OsAffx.23996.1.S1_at11/111+41503240..41504544xylanase inhibitor precursor, putative, expressed
LOC_Os01g71170OsAffx.11813.1.S1_at11/111+41506282..41507216expressed protein
LOC_Os01g71180OsAffx.23997.1.S1_at11/111+41510649..41513399PPR986-12, putative
LOC_Os01g71190Os.25590.1.S1_at11/111+41513875..41515630Photosystem II reaction center W protein, putative, expressed
LOC_Os01g71200Os.33686.1.S1_at11/111+41520199..41525752Ribonucleoprotein, putative, expressed
LOC_Os01g71210Os.51276.1.S1_x_at11/111+41528408..41529133expressed protein
LOC_Os01g71220Os.53646.1.S1_at10/111+41530698..41535561hydroxyproline-rich glycoprotein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015979biological_processphotosynthesis
GO:0009539cellular_componentphotosystem II reaction center
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25590.1.S1_at--487--891Chr01:41515073..41515097 (25 bp)
AGGCCGGCGATCCAGTTCATCCAGG
LOC_Os01g71190
Os.25590.1.S1_at--1032--1751Chr01:41515223..41515247 (25 bp)
ACCGGCTTCTACATGATCGACGACG
LOC_Os01g71190
Os.25590.1.S1_at--91--1151Chr01:41515260..41515284 (25 bp)
AGTCGGTGGACGTCAGCGCCAAGTT
LOC_Os01g71190
Os.25590.1.S1_at--30--891Chr01:41515311..41515335 (25 bp)
AGGCCAAGTACGTCATGCGCACGCC
LOC_Os01g71190
Os.25590.1.S1_at--267--1111Chr01:41515341..41515365 (25 bp)
AGTGGGACAGGTTCATGCGATTCAT
LOC_Os01g71190
Os.25590.1.S1_at--723--811Chr01:41515364..41515388 (25 bp)
ATGGAGAGGTACTCCCAGGCCAACG
LOC_Os01g71190
Os.25590.1.S1_at--604--1991Chr01:41515445..41515469 (25 bp)
ACTGCCTTGAGCATGTACTGTGTGC
LOC_Os01g71190
Os.25590.1.S1_at--894--7451Chr01:41515464..41515488 (25 bp)
GTGTGCTCTTTCAGTGTAAATACCT
LOC_Os01g71190
Os.25590.1.S1_at--676--5211Chr01:41515491..41515515 (25 bp)
GAATTCTGATCATCATAAGCTCGAT
LOC_Os01g71190
Os.25590.1.S1_at--952--4931Chr01:41515539..41515563 (25 bp)
GCATTGATTGCGTTTCTTCTATGAG
LOC_Os01g71190
Os.25590.1.S1_at--501--6851Chr01:41515573..41515597 (25 bp)
GTATTCGTAAATACCCCTATAAGCA
LOC_Os01g71190
Target Sequence 
AGGCCGGCGATCCAGTTCATCCAGGGCACCGACGAGCAGACGATCCCGGACGTGCGGCTGACCAAGTCCCGGGACGGCAC
CAACGGCGTGGCCATCTTCACCTTCGACCAGCCGTCGGTGTTCGACTCGTCGGCNGAGCTNGGCGACATCACCGGCTTCT
ACATGATCGACGACGAGGGCGTGCTCCAGTCGGTGGACGTCAGCGCCAAGTTCGTCAACGGCAAGCCGGCGCTCATCGAG
GCCAAGTACGTCATGCGCACGCCGCGGGAGTGGGACAGGTTCATGCGATTCATGGAGAGGTACTCCCAGGCCAACGGCCT
CCAGTTCGTCAAGAAGTGATCGCCTTTNTNTTNCTCCTTTTNNNCCCNNNACACTGCCTTGAGCATGTACTGTGTGCTCT
TTCAGTGTAAATACCTATGAATTCTGATCATCATAAGCTCGATACATGATGAGTTGTTTGGTGTGTGCATTGATTGCGTT
TCTTCTATGAGTGCAATTTTGTATTCGTAAATACCCCTATAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25590.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis