Browse Element(s) Details


Os.51276.1.S1_x_at

Description gb:AK062398.1
DB_XREF= gi:32972416
TID=Os.51276.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51276 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-D10, full insert sequence.
FL= gb:AK062398.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7121011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71160OsAffx.23996.1.S1_at11/111+41503240..41504544xylanase inhibitor precursor, putative, expressed
LOC_Os01g71170OsAffx.11813.1.S1_at11/111+41506282..41507216expressed protein
LOC_Os01g71180OsAffx.23997.1.S1_at11/111+41510649..41513399PPR986-12, putative
LOC_Os01g71190Os.25590.1.S1_at11/111+41513875..41515630Photosystem II reaction center W protein, putative, expressed
LOC_Os01g71200Os.33686.1.S1_at11/111+41520199..41525752Ribonucleoprotein, putative, expressed
LOC_Os01g71210Os.51276.1.S1_x_at11/111+41528408..41529133expressed protein
LOC_Os01g71220Os.53646.1.S1_at10/111+41530698..41535561hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os01g71230Os.12071.1.S1_at11/111+41541160..41543918Nascent polypeptide-associated complex alpha subunit-like protein 3, putative, expressed
LOC_Os01g71240Os.34808.1.S1_at11/111+41546886..41554183Calcium-transporting ATPase 11, plasma membrane-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51276.1.S1_x_at--111--9731Chr01:41528978..41529002 (25 bp)
TCAAGAAGCTTCCAACGGCGGCGGT
LOC_Os01g71210
Os.51276.1.S1_x_at--625--971Chr01:41528921..41528945 (25 bp)
AGGAGCAGTACTACGCGGCTATCAC
LOC_Os01g71210
Os.51276.1.S1_x_at--746--9571Chr01:41528693..41528717 (25 bp)
TCTTCGCCGGGAACTACATGTTCAT
LOC_Os01g71210
Os.51276.1.S1_x_at--1034--9871Chr01:41528679..41528703 (25 bp)
TACATGTTCATGCAGGTCACCCCGT
LOC_Os01g71210
Os.51276.1.S1_x_at--81--1411Chr01:41528621..41528645 (25 bp)
AGAACGGCGTCGTGCCGTACTACCA
LOC_Os01g71210
Os.51276.1.S1_x_at--1003--3531Chr01:41528587..41528611 (25 bp)
CATCGGCGGCAAGAACAGCAAGCTC
LOC_Os01g71210
Os.51276.1.S1_x_at--651--3411Chr01:41528572..41528596 (25 bp)
CAGCAAGCTCGGCACGACGTGTTCA
LOC_Os01g71210
Os.51276.1.S1_x_at--1117--5751Chr01:41528557..41528581 (25 bp)
GACGTGTTCACCTAGCGTGATGTAC
LOC_Os01g71210
Os.51276.1.S1_x_at--310--6851Chr01:41528515..41528539 (25 bp)
GTTTGATTTGACACGTACTACTACT
LOC_Os01g71210
Os.51276.1.S1_x_at--473--2051Chr01:41528493..41528517 (25 bp)
ACTTAATTGGATATCATCTCGTCAT
LOC_Os01g71210
Os.51276.1.S1_x_at--186--471Chr01:41528478..41528502 (25 bp)
ATCTCGTCATTATCTTTTCCTTCTT
LOC_Os01g71210
Target Sequence 
TCAAGAAGCTTCCAACGGCGGCGGTGGCGGCGCCGCCTGATGTGCCGCAGCAGCTGCAGGAGCAGTACTACGCGGCTATC
ACCGCCGCCGCCGCGGCCGCCGCGCAGCATGGCGGCGGCGGCGGCATTGGCAGGAGGAGGAGGAGGAGGATGAGGCCGAG
GCTGAGGATCTCGAGGCTGGCGAGGGTGCTGCGGAGGAAGGCGGCGGCGGTGGGCGGCGCGGTGAGGGCGTCGGTGGCGA
AGGTGGTGCGGCGGCTCAGGGAAGGGAGCCCCTACGTCGGGGACCTCTTCGCCGGGAACTACATGTTCATGCAGGTCACC
CCGTCGCCGACCATGGCCGCCGCCGCCGGCCTGGCCAAGAACGGCGTCGTGCCGTACTACCACCACGGCATCATCGGCGG
CAAGAACAGCAAGCTCGGCACGACGTGTTCACCTAGCGTGATGTACAAAGTTAAGTTCAATTAGTTTGATTTGACACGTA
CTACTACTTAATTGGATATCATCTCGTCATTATCTTTTCCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51276.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis