Browse Element(s) Details


Os.33686.1.S1_at

Description gb:AK099501.1
DB_XREF= gi:32984710
TID=Os.33686.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33686 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribonucleoprotein (P0504E02.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013028I07, full insert sequence.
FL= gb:AK099501.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7120011/11Ribonucleoprotein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71140Os.36248.1.S1_at11/111+41496376..41497851xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71150OsAffx.26553.2.S1_at1/111+41499243..41499803hypothetical protein
LOC_Os01g71160OsAffx.23996.1.S1_at11/111+41503240..41504544xylanase inhibitor precursor, putative, expressed
LOC_Os01g71170OsAffx.11813.1.S1_at11/111+41506282..41507216expressed protein
LOC_Os01g71180OsAffx.23997.1.S1_at11/111+41510649..41513399PPR986-12, putative
LOC_Os01g71190Os.25590.1.S1_at11/111+41513875..41515630Photosystem II reaction center W protein, putative, expressed
LOC_Os01g71200Os.33686.1.S1_at11/111+41520199..41525752Ribonucleoprotein, putative, expressed
LOC_Os01g71210Os.51276.1.S1_x_at11/111+41528408..41529133expressed protein
LOC_Os01g71220Os.53646.1.S1_at10/111+41530698..41535561hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os01g71230Os.12071.1.S1_at11/111+41541160..41543918Nascent polypeptide-associated complex alpha subunit-like protein 3, putative, expressed
LOC_Os01g71240Os.34808.1.S1_at11/111+41546886..41554183Calcium-transporting ATPase 11, plasma membrane-type, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009909biological_processregulation of flower development
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33686.1.S1_at--1113--9051Chr01:41524684..41524708 (25 bp)
TGCATCTTCTAGTCCCAGTAGCAAT
LOC_Os01g71200
Os.33686.1.S1_at--1108--7251Chr01:41525097..41525121 (25 bp)
GTCCTCCAGGAGCTAATCTATTTAT
LOC_Os01g71200
Os.33686.1.S1_at--646--2771Chr01:41525151..41525175 (25 bp)
AAGACCTTTCCAATGCATTCCAGAG
LOC_Os01g71200
Os.33686.1.S1_at--730--5151Chr01:41525216..41525240 (25 bp)
GCAACGGGTTCCAGCAAATGCTTTG
LOC_Os01g71200
Os.33686.1.S1_at--210--8871Chr01:41525484..41525508 (25 bp)
TGATGACCACGCGATCAGGTTCCTG
LOC_Os01g71200
Os.33686.1.S1_at--788--511Chr01:41525531..41525555 (25 bp)
ATCGTTGAATTGTTTGCTCTGGCCG
LOC_Os01g71200
Os.33686.1.S1_at--1139--5051Chr01:41525555..41525579 (25 bp)
GCAGCATTGGGAGCTTCGTGTATCT
LOC_Os01g71200
Os.33686.1.S1_at--1040--5211Chr01:41525643..41525667 (25 bp)
GAATTTGTTTCATCAGACCCTTGTA
LOC_Os01g71200
Os.33686.1.S1_at--272--7531Chr01:41525693..41525717 (25 bp)
GTGGACATTTTCTCCTGACAGTGAT
LOC_Os01g71200
Os.33686.1.S1_at--1137--2111Chr01:41525710..41525734 (25 bp)
ACAGTGATTCCGGTTTCTCATTGAC
LOC_Os01g71200
Os.33686.1.S1_at--419--6831Chr01:41525722..41525746 (25 bp)
GTTTCTCATTGACACGATTCCGGAC
LOC_Os01g71200
Target Sequence 
TGCATCTTCTAGTCCCAGTAGCAATCCTGGTGGCCAAATAGAAGGTCCTCCAGGAGCTAATCTATTTATCTATCATATCC
CACAAGATTATGGGGACCAAGACCTTTCCAATGCATTCCAGAGGTTCGGTAGAGTACTAAGTGCTAAGGTTTTTGTAGAC
AAAGCAACGGGTTCCAGCAAATGCTTTGGTTTTGTAAGCTACGATTCTCCTGCTTCCGCACAGGCAGCCATTGGTGTGAT
GAACGGTTTCCAATTAGGCAGTAAAAAACTCAAAGTACAACTCAAGAGAGACAACTCCAAGCACAGTAAACCCTTTTGAC
GAAAACTATGATGACCACGCGATCAGGTTCCTGGTACATATTTGTCAGATAATTGATCGTTGAATTGTTTGCTCTGGCCG
CAGCATTGGGAGCTTCGTGTATCTTCTTTGTTCAATTCACATTCTTGAACACTGTTACGTCGTGTAATTTACTGCAGCCT
AGTGGTAGAATTTGTTTCATCAGACCCTTGTACATCAGAAGTCAGATTCATTCAATTGTGGACATTTTCTCCTGACAGTG
ATTCCGGTTTCTCATTGACACGATTCCGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis