Browse Element(s) Details


OsAffx.11811.1.S1_at

Description tigr:9629.m07021
TID=OsAffx.11811.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g710309/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70980Os.9236.1.S1_at11/111+41412751..41415017expressed protein
LOC_Os01g70990OsAffx.21835.1.S1_x_at11/111+41417152..41417529Glutaredoxin-like family protein
LOC_Os01g70990OsAffx.21835.1.S1_at11/111+41417152..41417529Glutaredoxin-like family protein
LOC_Os01g71000Os.38163.1.S1_at11/111+41422760..41427216Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g71010Os.10088.1.S1_a_at11/111+41427345..41431903Lipase family protein, expressed
LOC_Os01g71020OsAffx.11810.1.S1_x_at11/111+41433477..41433785hypothetical protein
LOC_Os01g71030OsAffx.11811.1.S1_at9/111+41436399..41438452hypothetical protein
LOC_Os01g71040Os.18275.1.S1_at11/111+41438853..41441707expressed protein
LOC_Os01g71040Os.18275.1.S2_at11/111+41438853..41441707expressed protein
LOC_Os01g71050Os.28078.1.S1_at11/111+41444065..41449088MSP domain containing protein, expressed
LOC_Os01g71060OsAffx.21834.1.S1_x_at11/111+41453387..41454526xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71070Os.30593.1.S1_at10/111+41460349..41461832xylanase inhibitor TAXI-IV, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11811.1.S1_at--146--271Chr01:41436429..41436453 (25 bp)
ATATGCATGCTCTCGCATCTGGACT
LOC_Os01g71030
OsAffx.11811.1.S1_at--805--9331Chr01:41436441..41436465 (25 bp)
TCGCATCTGGACTGGATCAACCCAA
LOC_Os01g71030
OsAffx.11811.1.S1_at--199--8571Chr01:41436453..41436477 (25 bp)
TGGATCAACCCAACGGTGACCCTGA
LOC_Os01g71030
OsAffx.11811.1.S1_at--443--8931Chr01:41436475..41436499 (25 bp)
TGACCAGTGACCACCGGCTTCTCTT
LOC_Os01g71030
OsAffx.11811.1.S1_at--122--9511NONE
TCTCCGCCGGTTGGATATCAGACAA
NONE
OsAffx.11811.1.S1_at--686--2271Chr01:41437994..41438018 (25 bp)
AAATCGAACAACCAATTCCGCACCA
LOC_Os01g71030
OsAffx.11811.1.S1_at--171--3411NONE
CAGCACATCAGGATAGAGTTCTTAT
NONE
OsAffx.11811.1.S1_at--646--6731Chr01:41437713..41438171 (25 bp)
GTTCTTATTTCAGTATGGTGGACCT
LOC_Os01g71030
OsAffx.11811.1.S1_at--80--7531Chr01:41438164..41438188 (25 bp)
GTGGACCTGATCATCTCTCTTTTAG
LOC_Os01g71030
OsAffx.11811.1.S1_at--943--10371Chr01:41438183..41438207 (25 bp)
TTTTAGCCAAGACCTGATCAATGCA
LOC_Os01g71030
OsAffx.11811.1.S1_at--153--3571Chr01:41438216..41438240 (25 bp)
CATTCAGTTAACTGGCACTGTCATT
LOC_Os01g71030
Target Sequence 
ATATGCATGCTCTCGCATCTGGACTGGATCAACCCAACGGTGACCCTGACCAGTGACCACCGGCTTCTCTTCTCCGCCGG
TTGGATATCAGACAAATCGAACAACCAATTCCGCACCAACCATGGCCACCACTACCAGCACATCAGGATAGAGTTCTTAT
TTCAGTATGGTGGACCTGATCATCTCTCTTTTAGCCAAGACCTGATCAATGCAAACTTATACATTCAGTTAACTGGCACT
GTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11811.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis