Browse Element(s) Details


Os.9236.1.S1_at

Description gb:AK069146.1
DB_XREF= gi:32979170
TID=Os.9236.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9236 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0492G09.23 (P0492G09.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007E08, full insert sequence.
FL= gb:AK069146.1 gb:AK058930.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7098011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70940Os.26989.1.S1_a_at11/111+41387955..41393869Potassium transporter 7, putative, expressed
LOC_Os01g70950Os.23695.3.S1_x_at11/111+41393885..41397603sperm protein SSP411, putative, expressed
LOC_Os01g70950Os.23695.2.S1_at3/111+41393885..41397603sperm protein SSP411, putative, expressed
LOC_Os01g70960Os.6336.1.S1_at11/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70960Os.6336.2.S1_at10/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70960OsAffx.26985.1.S1_x_at1/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70970Os.18382.1.S1_at11/111+41406321..41408855Protein kinase domain containing protein, expressed
LOC_Os01g70970OsAffx.12696.1.S1_at1/111+41406321..41408855Protein kinase domain containing protein, expressed
LOC_Os01g70980Os.9236.1.S1_at11/111+41412751..41415017expressed protein
LOC_Os01g70990OsAffx.21835.1.S1_x_at11/111+41417152..41417529Glutaredoxin-like family protein
LOC_Os01g70990OsAffx.21835.1.S1_at11/111+41417152..41417529Glutaredoxin-like family protein
LOC_Os01g71000Os.38163.1.S1_at11/111+41422760..41427216Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g71010Os.10088.1.S1_a_at11/111+41427345..41431903Lipase family protein, expressed
LOC_Os01g71020OsAffx.11810.1.S1_x_at11/111+41433477..41433785hypothetical protein
LOC_Os01g71030OsAffx.11811.1.S1_at9/111+41436399..41438452hypothetical protein
LOC_Os01g71040Os.18275.1.S1_at11/111+41438853..41441707expressed protein
LOC_Os01g71040Os.18275.1.S2_at11/111+41438853..41441707expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9236.1.S1_at--790--1891Chr01:41413287..41413311 (25 bp)
ACGTATTACATGATCCCAACTCTGC
LOC_Os01g70980
Os.9236.1.S1_at--814--4171Chr01:41413273..41413297 (25 bp)
CCCAACTCTGCTTCTTGTATCAAAG
LOC_Os01g70980
Os.9236.1.S1_at--556--391Chr01:41413242..41413266 (25 bp)
ATCAGTACGTCTCTTCTGGTCGCAT
LOC_Os01g70980
Os.9236.1.S1_at--803--7791Chr01:41413225..41413249 (25 bp)
GGTCGCATCAGTATTCCATCAAGTC
LOC_Os01g70980
Os.9236.1.S1_at--29--991Chr01:41413187..41413211 (25 bp)
AGGAGATCCTTCTGGACTATGTCCA
LOC_Os01g70980
Os.9236.1.S1_at--854--2031Chr01:41413172..41413196 (25 bp)
ACTATGTCCATCACGATATCACCAG
LOC_Os01g70980
Os.9236.1.S1_at--1074--10071Chr01:41413040..41413064 (25 bp)
TAGGCACCCATCTGTACACTGAAAA
LOC_Os01g70980
Os.9236.1.S1_at--55--851Chr01:41413007..41413031 (25 bp)
ATGGACAAATGCCTGCTGCTGGTTT
LOC_Os01g70980
Os.9236.1.S1_at--1100--8791Chr01:41412978..41413002 (25 bp)
TGTTCTGCAGTTCCAACTTGCTATC
LOC_Os01g70980
Os.9236.1.S1_at--609--9751Chr01:41412804..41412828 (25 bp)
TAATTTCTCGTCTTCTGGAATCGCT
LOC_Os01g70980
Os.9236.1.S1_at--715--9311Chr01:41412780..41412804 (25 bp)
TCCCAGTTGTCGTGTTTTGCAGTAA
LOC_Os01g70980
Target Sequence 
ACGTATTACATGATCCCAACTCTGCTTCTTGTATCAAAGAACAGCATCAGTACGTCTCTTCTGGTCGCATCAGTATTCCA
TCAAGTCTACATGNTTCTACAAGGAGATCCTTCTGGACTATGTCCATCACGATATCACCAGGAAGTGGGTTTTCATATAC
TTCAAGATTCTCCTGATAATCATGGCCAAGGAAACAGTTGTCTACTTCGATTTATTTTAAGTTCATGGTAGTTTCTTGAG
AGACGTGTTAGGCACCCATCTGTACACTGAAAATAATCAAGATGGACAAATGCCTGCTGCTGGTTTCCTCTGTTCTGCAG
TTCCAACTTGCTATCTTTTTCTGATTTTGGCTGAACTGATTTAAGGCCAACTAAGGCACCAAACAATGTATTTCTTCAAG
CAANGATCAGTTTGTCCCTAAAACCTTAGATTGAAAAAGTCTCCTGATTTTGTAATAATGGTATATATCAACCTTGAGTT
CTGTTAATTTCTCGTCTTCTGGAATCGCTCCCAGTTGTCGTGTTTTGCAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis