Browse Element(s) Details


Os.26989.1.S1_a_at

Description gb:AK071411.1
DB_XREF= gi:32981434
TID=Os.26989.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26989 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative HAK2 (K+ transporter) (P0492G09.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091C23, full insert sequence.
FL= gb:AK071411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7094011/11Potassium transporter 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70920Os.24785.2.A1_at11/111+41379208..41383258Cullin-1, putative, expressed
LOC_Os01g70920Os.24785.1.A1_at11/111+41379208..41383258Cullin-1, putative, expressed
LOC_Os01g70920Os.24785.2.A1_x_at9/111+41379208..41383258Cullin-1, putative, expressed
LOC_Os01g70930Os.45927.1.S1_at11/111+41384010..41385695oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g70930Os.45927.1.S1_x_at11/111+41384010..41385695oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g70930Os.51245.1.S1_at1/111+41384010..41385695oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g70940Os.26989.1.S1_a_at11/111+41387955..41393869Potassium transporter 7, putative, expressed
LOC_Os01g70950Os.23695.3.S1_x_at11/111+41393885..41397603sperm protein SSP411, putative, expressed
LOC_Os01g70950Os.23695.2.S1_at3/111+41393885..41397603sperm protein SSP411, putative, expressed
LOC_Os01g70960Os.6336.1.S1_at11/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70960Os.6336.2.S1_at10/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70960OsAffx.26985.1.S1_x_at1/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70970Os.18382.1.S1_at11/111+41406321..41408855Protein kinase domain containing protein, expressed
LOC_Os01g70970OsAffx.12696.1.S1_at1/111+41406321..41408855Protein kinase domain containing protein, expressed
LOC_Os01g70980Os.9236.1.S1_at11/111+41412751..41415017expressed protein
LOC_Os01g70990OsAffx.21835.1.S1_x_at11/111+41417152..41417529Glutaredoxin-like family protein
LOC_Os01g70990OsAffx.21835.1.S1_at11/111+41417152..41417529Glutaredoxin-like family protein

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009605biological_processresponse to external stimulus
GO:0009826biological_processunidimensional cell growth
GO:0009932biological_processcell tip growth
GO:0016020cellular_componentmembrane
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26989.1.S1_a_at--127--3171Chr01:41393000..41393024 (25 bp)
AATTGATGTTGGCTACTCTTTCCTC
LOC_Os01g70940
Os.26989.1.S1_a_at--1023--1431Chr01:41393029..41393053 (25 bp)
AGAACTGCAGAGGTCCATCGGTCAC
LOC_Os01g70940
Os.26989.1.S1_a_at--691--6971Chr01:41393096..41393120 (25 bp)
GTACCAAGTGTAGCGCGATGCTCAT
LOC_Os01g70940
Os.26989.1.S1_a_at--27--1891Chr01:41393132..41393156 (25 bp)
ACGTCACGTGGATACCCGGTAGCAA
LOC_Os01g70940
Os.26989.1.S1_a_at--288--2191Chr01:41393156..41393451 (25 bp)
ACAAATCATGTGCTACCTGTGGCCG
LOC_Os01g70940
Os.26989.1.S1_a_at--656--3891Chr01:41393443..41393467 (25 bp)
CTGTGGCCGCCTTTTTGGAGTCGAG
LOC_Os01g70940
Os.26989.1.S1_a_at--882--7211Chr01:41393462..41393486 (25 bp)
GTCGAGGCTTTGATTCCTATGCTTT
LOC_Os01g70940
Os.26989.1.S1_a_at--255--9771Chr01:41393573..41393597 (25 bp)
TAATGATCGTAGTTTGCTCTTCCCT
LOC_Os01g70940
Os.26989.1.S1_a_at--880--9751Chr01:41393644..41393668 (25 bp)
TAATGGAAATATGCGTCCCCGTTTT
LOC_Os01g70940
Os.26989.1.S1_a_at--672--4631Chr01:41393694..41393718 (25 bp)
GCGTTCTCGTAGCTGATATATCCCA
LOC_Os01g70940
Os.26989.1.S1_a_at--479--1131Chr01:41393797..41393821 (25 bp)
AGTGCCTCGTGGAATTTCTCTGCAA
LOC_Os01g70940
Target Sequence 
AATTGATGTTGGCTACTCTTTCCTCCGGAAGAACTGCAGAGGTCCATCGGTCACACTGCACATTCCACATATTAGTCTGA
TAGAAGTTGGAATGGCGTACCAAGTGTAGCGCGATGCTCATCGCAGGTCACGACGTCACGTGGATACCCGGTAGCAACAA
ATCATGTGCTACCTGTGGCCGCCTTTTTGGAGTCGAGGCTTTGATTCCTATGCTTTATCNATNNNNTTTCAGTTTCAGTT
GGTACAGATGAAGAGGCTNNCTCTATGTTAATATGATCATTTAGCTCAAATAAAGCATCAGATCTAATGATCGTAGTTTG
CTCTTCCCTTTTGGTATATTNACATGCATGCTCTGTAATTTTTATGGGAGCTATGTAATGGAAATATGCGTCCCCGTTTT
TATTGCAGNTANNNAANGGAAATATGCGTTCTCGTAGCTGATATATCCCAATTTTTGTTAGGAAGCGATTACCACATATA
TTCTTTCATGTATGAATTTCTTATGGAACAGAACATCTGTAGATATACAGTGCCTCGTGGAATTTCTCTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26989.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis