Browse Element(s) Details


OsAffx.24015.1.S1_at

Description tigr:9629.m07184
TID=OsAffx.24015.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7262011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72590NANA1+42437325..42437531hypothetical protein
LOC_Os01g72600OsAffx.2464.1.S1_at11/111+42449501..42450490Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os01g72610Os.18229.1.S1_at11/111+42455186..42457054glycosyltransferase, putative, expressed
LOC_Os01g72620OsAffx.24015.1.S1_at11/111+42461140..42462786hypothetical protein
LOC_Os01g72620Os.18229.3.S1_x_at11/111+42461140..42462786hypothetical protein
LOC_Os01g72620Os.18229.1.S1_at3/111+42461140..42462786hypothetical protein
LOC_Os01g72630Os.34199.1.S1_at11/111+42465498..42469884expressed protein
LOC_Os01g72630Os.34199.2.S1_s_at11/111+42465498..42469884expressed protein
LOC_Os01g72650Os.8818.2.S1_x_at11/111+42476558..42483700RNA recognition motif family protein, expressed
LOC_Os01g72650Os.8818.1.S1_at11/111+42476558..42483700RNA recognition motif family protein, expressed
LOC_Os01g72660OsAffx.11831.1.S1_at11/111+42487651..42488127hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24015.1.S1_at--433--7911Chr01:42461487..42461511 (25 bp)
GGTTGCTATGCGGTGTTAAATGTAT
LOC_Os01g72620
OsAffx.24015.1.S1_at--126--9851Chr01:42461471..42461495 (25 bp)
TAAATGTATTTTTCCTGGGCAGAGA
LOC_Os01g72620
OsAffx.24015.1.S1_at--994--10291Chr01:42461461..42461485 (25 bp)
TTTCCTGGGCAGAGAGCAGTTTGCT
LOC_Os01g72620
OsAffx.24015.1.S1_at--351--1531Chr01:42461447..42461471 (25 bp)
AGCAGTTTGCTGTGCTGGCTCAAAG
LOC_Os01g72620
OsAffx.24015.1.S1_at--991--8311Chr01:42461431..42461455 (25 bp)
GGCTCAAAGTGTTTGCATCCTCAGC
LOC_Os01g72620
OsAffx.24015.1.S1_at--823--5531Chr01:42461388..42461412 (25 bp)
GAAACAACAAACATCAGCACCATAT
LOC_Os01g72620
OsAffx.24015.1.S1_at--1055--5071Chr01:42461372..42461396 (25 bp)
GCACCATATCAGTTGGCGCTGAAAT
LOC_Os01g72620
OsAffx.24015.1.S1_at--281--6571Chr01:42461304..42461328 (25 bp)
GATTCTTTGGCGCTGACATCGGGCA
LOC_Os01g72620
OsAffx.24015.1.S1_at--255--5672Chr07:17050855..17050875 (21 bp)
GACATCGGGCATCTCAGCGCTGAAG
NONE
OsAffx.24015.1.S1_at--636--2711Chr01:42461268..42461292 (25 bp)
AAGCTTGTGGCGCTGACATCCCTGC
LOC_Os01g72620
OsAffx.24015.1.S1_at--192--10871Chr01:42461184..42461208 (25 bp)
TTGGCGCTTTCATGCACAACATCAG
LOC_Os01g72620
Target Sequence 
GGTTGCTATGCGGTGTTAAATGTATTTTTCCTGGGCAGAGAGCAGTTTGCTGTGCTGGCTCAAAGTGTTTGCATCCTCAG
CGCCAACACAAATGGCGCTGAAACAACAAACATCAGCACCATATCAGTTGGCGCTGAAATAGGCAATGTCAGCAGCCACC
AAAGAAACAAAGTGAAGTGCCAAGATTCTTTGGCGCTGACATCGGGCATCTCAGCGCTGAAGCTTGTGGCGCTGACATCC
CTGCCACGTCGGCACGAGGAGTCGCTCGGCCGCCACGGTGGCACAATGTCAGCGCCAAGCATGTTGGCGCTTTCATGCAC
AACATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24015.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis