Browse Element(s) Details


OsAffx.24046.3.S1_x_at

Description tigr:9634.m01476
TID=OsAffx.24046.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1473011/11Transposase, putative
LOC_Os01g280406/11hAT family dimerisation domain containing protein
LOC_Os01g568306/11hAT family dimerisation domain containing protein
LOC_Os08g189605/11Transposase, putative
LOC_Os02g010402/11hypothetical protein
LOC_Os01g538702/11hAT family dimerisation domain containing protein
LOC_Os01g153801/11hAT family dimerisation domain containing protein
LOC_Os04g487801/11Transposase, putative
LOC_Os12g279801/11hAT family dimerisation domain containing protein
LOC_Os05g262001/11hypothetical protein
LOC_Os07g393401/11hAT family dimerisation domain containing protein
LOC_Os07g177801/11hAT family dimerisation domain containing protein
LOC_Os01g050301/11hAT family dimerisation domain containing protein
LOC_Os01g384401/11hAT family dimerisation domain containing protein
LOC_Os07g178501/11hAT family dimerisation domain containing protein
LOC_Os06g124801/11hAT family dimerisation domain containing protein, expressed
LOC_Os01g109101/11hAT family dimerisation domain containing protein
LOC_Os06g074401/11hAT family dimerisation domain containing protein
LOC_Os06g073701/11hAT family dimerisation domain containing protein
LOC_Os05g400901/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14710NANA6+8282059..8282487Myb-like DNA-binding domain containing protein
LOC_Os06g14720NANA6+8293715..8294335retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g14730OsAffx.24046.3.S1_x_at11/116+8297393..8299635Transposase, putative
LOC_Os06g14730OsAffx.24046.7.S1_x_at6/116+8297393..8299635Transposase, putative
LOC_Os06g14730OsAffx.24046.5.S1_x_at2/116+8297393..8299635Transposase, putative
LOC_Os06g14730OsAffx.24046.2.S1_x_at1/116+8297393..8299635Transposase, putative
LOC_Os06g14740Os.14167.1.S1_at11/116+8300781..8315924expressed protein
LOC_Os06g14750OsAffx.15432.1.S1_at11/116+8316768..8324556Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os06g14750OsAffx.17864.1.S1_x_at1/116+8316768..8324556Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24046.3.S1_x_at--815--3314Chr06:8299151..8299175 (25 bp)
CACTTGGACATGGTGCTGGTGCCAG
LOC_Os06g14730
OsAffx.24046.3.S1_x_at--219--5691Chr06:8299187..8299211 (25 bp)
GACTTGGTGCTGGTCTATTTTCCAG
LOC_Os06g14730
OsAffx.24046.3.S1_x_at--604--975Chr06:8299210..8299234 (25 bp)
AGGAGAACTTCTGCTACTGCTTTGA
LOC_Os06g14730
OsAffx.24046.3.S1_x_at--235--9771Chr06:8299251..8299275 (25 bp)
TAATGCTAACTCGAATGCCTCTGAG
LOC_Os06g14730
OsAffx.24046.3.S1_x_at--640--3775Chr06:8299269..8299293 (25 bp)
CTCTGAGTTGTCTGCCTATCTTGAT
LOC_Os06g14730
OsAffx.24046.3.S1_x_at--988--74Chr06:8299311..8299335 (25 bp)
ATTCGACGATGACTTCAATATCCTA
LOC_Os06g14730
OsAffx.24046.3.S1_x_at--1028--254Chr06:8299328..8299352 (25 bp)
ATATCCTAAACTGGTGGCATGAGCA
LOC_Os06g14730
OsAffx.24046.3.S1_x_at--638--2191Chr06:8299356..8299380 (25 bp)
ACACACATATCCTATTCTGTCCATA
LOC_Os06g14730
OsAffx.24046.3.S1_x_at--364--1311Chr06:8299389..8299413 (25 bp)
AGATGTCTTGACTGTTTCTGTTTCT
LOC_Os06g14730
OsAffx.24046.3.S1_x_at--779--251Chr06:8299417..8299441 (25 bp)
ATATCGTCGAAGTCTGCTTTTAGCT
LOC_Os06g14730
OsAffx.24046.3.S1_x_at--492--48921Chr07:23566707..23566730 (24 bp)
GCTTTTAGCTTAACTGGCAGGATCA
LOC_Os07g39340
Target Sequence 
CACTTGGACATGGTGCTGGTGCCAGTCCAGCTTCTGGACTTGGTGCTGGTCTATTTTCCAGGAGAACTTCTGCTACTGCT
TTGATTCAAGCTGTTTCTTCTAATGCTAACTCGAATGCCTCTGAGTTGTCTGCCTATCTTGATAGTGACACTGTCAACCA
ATTCGACGATGACTTCAATATCCTAAACTGGTGGCATGAGCACAAACACACATATCCTATTCTGTCCATATTAGCTAGAG
ATGTCTTGACTGTTTCTGTTTCTACTATATCGTCGAAGTCTGCTTTTAGCTTAACTGGCAGGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24046.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis