Browse Element(s) Details


OsAffx.24056.2.S1_at

Description tigr:9629.m06359
TID=OsAffx.24056.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SWIM zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6420011/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64150Os.47463.1.S1_x_at3/111+37584987..37588684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g64150Os.14491.2.S1_x_at2/111+37584987..37588684transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g64160NANA1+37591411..37594743transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g64170Os.4636.1.S2_at11/111+37596660..37601550Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g64170Os.4636.1.S1_a_at11/111+37596660..37601550Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g64180Os.18461.1.S1_at11/111+37602604..37604249expressed protein
LOC_Os01g64190Os.37413.1.S2_at11/111+37605840..37607296expressed protein
LOC_Os01g64190Os.37413.1.S1_at11/111+37605840..37607296expressed protein
LOC_Os01g64200OsAffx.24056.2.S1_at11/111+37608020..37612178transposon protein, putative, unclassified
LOC_Os01g64200OsAffx.24056.1.S1_x_at6/111+37608020..37612178transposon protein, putative, unclassified
LOC_Os01g64210OsAffx.23911.1.S1_at11/111+37615221..37615706hypothetical protein
LOC_Os01g64220OsAffx.21722.2.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_x_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.26706.1.S1_x_at1/111+37616338..37625220expressed protein
LOC_Os01g64230OsAffx.24964.1.S1_s_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.1.S1_x_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_s_at5/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_x_at3/111+37626562..37627388hypothetical protein
LOC_Os01g64240OsAffx.1021.2.S1_at11/111+37628468..37628879hypothetical protein
LOC_Os01g64250OsAffx.23912.1.S1_at11/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64250Os.5476.1.S1_at1/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64256Os.32232.1.S1_at11/111+37635114..37637161transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24056.2.S1_at--583--6131Chr01:37611702..37611726 (25 bp)
GAGGGTACAAATTCCAGATTCAAAA
LOC_Os01g64200
OsAffx.24056.2.S1_at--845--6931Chr01:37611732..37611756 (25 bp)
GTAGGGCCACAATACAGCATTAGAA
LOC_Os01g64200
OsAffx.24056.2.S1_at--237--8151Chr01:37611785..37611809 (25 bp)
GGACACTATTCAAAATCTAGAGCAA
LOC_Os01g64200
OsAffx.24056.2.S1_at--423--5271Chr01:37611847..37611871 (25 bp)
GAATGTGGTCACACTATTGTATTGA
LOC_Os01g64200
OsAffx.24056.2.S1_at--1139--5211Chr01:37611870..37611894 (25 bp)
GAATACCAAGCAGTGAGGTTGTATA
LOC_Os01g64200
OsAffx.24056.2.S1_at--442--3451Chr01:37611918..37611942 (25 bp)
CAGTTTCAGCTCAGCAAGACAAATG
LOC_Os01g64200
OsAffx.24056.2.S1_at--861--1731Chr01:37612033..37612057 (25 bp)
ACCTTGTGATATTGGACTTGGACTC
LOC_Os01g64200
OsAffx.24056.2.S1_at--203--8131Chr01:37612052..37612076 (25 bp)
GGACTCAGAGGAATTCACATGCATT
LOC_Os01g64200
OsAffx.24056.2.S1_at--204--751Chr01:37612083..37612107 (25 bp)
ATGTTTCAGAAGGATGGCATTCTTT
LOC_Os01g64200
OsAffx.24056.2.S1_at--391--8291Chr01:37612098..37612122 (25 bp)
GGCATTCTTTGCTCACATGTATTGA
LOC_Os01g64200
OsAffx.24056.2.S1_at--1003--52Chr01:37612118..37612142 (25 bp)
ATTGAAGATTATTGTCACGTCCCAA
LOC_Os01g64200
Target Sequence 
GAGGGTACAAATTCCAGATTCAAAAAGAATGTAGGGCCACAATACAGCATTAGAAGTTTCTTGACAGAGTATGAAAGAGT
TATGGACACTATTCAAAATCTAGAGCAACATGATGATCATGAATCAAGGACAAAAAGACCAAGTAGAATGTGGTCACACT
ATTGTATTGAATACCAAGCAGTGAGGTTGTATAACAACAAAATATTCAAAAAATTTCAGTTTCAGCTCAGCAAGACAAAT
GAATTGGAAATTGAGGAAATTGAGAGAATGAAGTGTTATGCAGTGTTTCAATCAAAGAATGTGATCAACAAGGAAATAAG
ACATAGAAAATACCTTGTGATATTGGACTTGGACTCAGAGGAATTCACATGCATTTGTTGTATGTTTCAGAAGGATGGCA
TTCTTTGCTCACATGTATTGAAGATTATTGTCACGTCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24056.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis