Browse Element(s) Details


OsAffx.24088.1.S1_at

Description tigr:9630.m00285
TID=OsAffx.24088.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box protein interaction domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0381011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03760Os.17524.1.S1_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os02g03760Os.17524.2.S1_x_at11/112+1575448..1579207S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os02g03770NANA2+1589008..1589945hypothetical protein
LOC_Os02g03780OsAffx.11881.1.S1_at11/112+1593186..1593406hypothetical protein
LOC_Os02g03790Os.39971.1.A1_at11/112+1594601..1599297expressed protein
LOC_Os02g03800OsAffx.2494.1.S1_at9/112+1600394..1601422expressed protein
LOC_Os02g03810OsAffx.24088.1.S1_at11/112+1601977..1603063F-box domain containing protein
LOC_Os02g03820Os.54258.1.S1_at11/112+1603372..1607211expressed protein
LOC_Os02g03830Os.20156.1.S1_at5/112+1611135..1611557expressed protein
LOC_Os02g03840Os.17347.1.S1_at11/112+1617326..1630163expressed protein
LOC_Os02g03840Os.17347.1.S2_at11/112+1617326..1630163expressed protein
LOC_Os02g03840Os.21055.1.A1_at4/112+1617326..1630163expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24088.1.S1_at--1109--3171Chr02:1602468..1602492 (25 bp)
CACTTCTGCGTCAAGGTCGGCGTGA
LOC_Os02g03810
OsAffx.24088.1.S1_at--308--6131Chr02:1602318..1602342 (25 bp)
GAGGGCCCCATGTTCGACATGCACG
LOC_Os02g03810
OsAffx.24088.1.S1_at--789--4051Chr02:1602275..1602299 (25 bp)
CGATGAAGTCGACCGAGCCGTACAT
LOC_Os02g03810
OsAffx.24088.1.S1_at--277--1671Chr02:1602260..1602284 (25 bp)
AGCCGTACATGGACGTCTGGATCGC
LOC_Os02g03810
OsAffx.24088.1.S1_at--1073--7751Chr02:1602222..1602246 (25 bp)
GGTGAGAACTGGGTGCGCCTCCTCC
LOC_Os02g03810
OsAffx.24088.1.S1_at--530--951Chr02:1602161..1602185 (25 bp)
AGGTGAAGCCCCACGGCTATGGTAA
LOC_Os02g03810
OsAffx.24088.1.S1_at--1132--3931Chr02:1602148..1602172 (25 bp)
CGGCTATGGTAAGGCCGTCCTGGAC
LOC_Os02g03810
OsAffx.24088.1.S1_at--573--5891Chr02:1602085..1602109 (25 bp)
GAGCTTCCTGTACGACACCAAAGGC
LOC_Os02g03810
OsAffx.24088.1.S1_at--1149--8931Chr02:1602050..1602074 (25 bp)
TGACTGGTGAGTTGCTCTCATCGTA
LOC_Os02g03810
OsAffx.24088.1.S1_at--830--6671Chr02:1602040..1602064 (25 bp)
GTTGCTCTCATCGTATCAACGGTTT
LOC_Os02g03810
OsAffx.24088.1.S1_at--1009--9691Chr02:1602025..1602049 (25 bp)
TCAACGGTTTTATCTGCCAGAGCTA
LOC_Os02g03810
Target Sequence 
CACTTCTGCGTCAAGGTCGGCGTGACGGTCGGCGACACCGTGTACTGGGGTCGCCGCCAGACCGACGACCGCGGCCAGAT
GTCGGCGTTCGACACGGTGTCGGAGACGTTCCGGCGGGTGGCGCCGCCGCCGCCGGTGAGCCACGCCGACGAGGGCCCCA
TGTTCGACATGCACGGCGCGCTCGCGGTGACGGCGATGAAGTCGACCGAGCCGTACATGGACGTCTGGATCGCCGCCGCC
GCCGGAGGTGAGAACTGGGTGCGCCTCCTCCGGGTGGAGCTGCCGCCGGGACATTACTACTCCGGCGAGGTGAAGCCCCA
CGGCTATGGTAAGGCCGTCCTGGACGACGCCGGTGTGCTGCTCGTCGCCATGAACGGCTGCCCGAGCTTCCTGTACGACA
CCAAAGGCAAGAGGATGGTGACTGGTGAGTTGCTCTCATCGTATCAACGGTTTTATCTGCCAGAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis