Browse Element(s) Details


OsAffx.24152.1.S1_at

Description tigr:9630.m00714
TID=OsAffx.24152.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0764011/11hypothetical protein
LOC_Os03g644001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07620Os.26886.2.S1_s_at11/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620Os.26886.6.S1_s_at11/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620OsAffx.16467.1.S1_at9/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620OsAffx.3425.1.S1_at1/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07630Os.24697.1.A1_s_at11/112+3950336..3955896Copper-transporting ATPase RAN1, putative, expressed
LOC_Os02g07640OsAffx.24152.1.S1_at11/112+3964023..3965483hypothetical protein
LOC_Os02g07650Os.8770.1.S1_at11/112+3971428..3975143zinc-binding protein, putative, expressed
LOC_Os02g07659NANA2+3980820..3981482NA

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24152.1.S1_at--299--100510Chr09:8701391..8701757 (25 bp)
TAGGGACCAGGATGACACAACGCAT
NONE
OsAffx.24152.1.S1_at--649--671Chr02:3964083..3964204 (25 bp)
ATGACACAACGCATTTCAGGCCCAG
LOC_Os02g07640
OsAffx.24152.1.S1_at--189--291Chr02:3964219..3964243 (25 bp)
ATAGTGCAGAGCCTTACTCCCACAT
LOC_Os02g07640
OsAffx.24152.1.S1_at--493--8431Chr02:3964246..3964270 (25 bp)
GGCCTGCGAGAACGCATCCTGTTCG
LOC_Os02g07640
OsAffx.24152.1.S1_at--22--3651Chr02:3964277..3964301 (25 bp)
CTTCCGCTCGTTGTGTGCAGCAAGG
LOC_Os02g07640
OsAffx.24152.1.S1_at--1005--2911Chr02:3964298..3964322 (25 bp)
AAGGCATGGCCGGATCATTCAAGCT
LOC_Os02g07640
OsAffx.24152.1.S1_at--1061--8411Chr02:3964305..3964328 (24 bp)
GGCCGGATCATTCAAGCTTCATATT
LOC_Os02g07640
OsAffx.24152.1.S1_at--74--5231Chr02:3965302..3965326 (25 bp)
GAATACCGGACCTGCAGTGGTACGT
LOC_Os02g07640
OsAffx.24152.1.S1_at--525--7691Chr02:3965353..3965377 (25 bp)
GGGTAACAGCTTTCATGCCGAAAGT
LOC_Os02g07640
OsAffx.24152.1.S1_at--954--6811Chr02:3965385..3965409 (25 bp)
GTTTTTGGCAAACTGCATGACATGG
LOC_Os02g07640
OsAffx.24152.1.S1_at--593--4051Chr02:3965429..3965453 (25 bp)
CGATGGATCCATGGACGTGACAGAT
LOC_Os02g07640
Target Sequence 
TAGGGACCAGGATGACACAACGCATTTCAGGCCCAGCCCACCAAGGCCCAATAGTGCAGAGCCTTACTCCCACATCCGGC
CTGCGAGAACGCATCCTGTTCGTGCATCCTTCCGCTCGTTGTGTGCAGCAAGGCATGGCCGGATCATTCAAGCTTCATAT
TGAGCATGGTCAAAAGACAGGAATACCGGACCTGCAGTGGTACGTGCAGGCAGTCAGAGCTATGTTAGCTGGGGTAACAG
CTTTCATGCCGAAAGTTTGGATAGTTTTTGGCAAACTGCATGACATGGATGCATGGATGGACATGATCGATGGATCCATG
GACGTGACAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis