Browse Element(s) Details


OsAffx.24166.1.S1_at

Description tigr:9630.m00802
TID=OsAffx.24166.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to DNA-binding protein ABF2 - wild oat
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g084409/11WRKY transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08430NANA2+4531333..4531860hypothetical protein
LOC_Os02g08440Os.12032.1.S1_at11/112+4542759..4544980WRKY transcription factor, putative, expressed
LOC_Os02g08440OsAffx.24166.1.S1_at9/112+4542759..4544980WRKY transcription factor, putative, expressed
LOC_Os02g08450NANA2+4549904..4552374transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08460OsAffx.11942.1.S1_at11/112+4557017..4557265hypothetical protein
LOC_Os02g08470OsAffx.2547.1.S1_at11/112+4558839..4559965hypothetical protein
LOC_Os02g08480Os.18010.1.S1_at11/112+4563066..4566600Ubiquitin fusion degradation protein UFD1 containing protein, expressed
LOC_Os02g08490Os.5574.1.S1_s_at11/112+4567614..4572910Chaperone clpB 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24166.1.S1_at--258--10591Chr02:4542931..4542955 (25 bp)
TTCTCTCCTTGGCTCAGCTTGACAT
LOC_Os02g08440
OsAffx.24166.1.S1_at--568--3711Chr02:4542989..4543013 (25 bp)
CTAGCTAACTAGGTCGTCGGATCAG
LOC_Os02g08440
OsAffx.24166.1.S1_at--876--2271Chr02:4543018..4543042 (25 bp)
AAATCGTTCGCCGATGGATCCGTGG
LOC_Os02g08440
OsAffx.24166.1.S1_at--708--831Chr02:4543031..4543055 (25 bp)
ATGGATCCGTGGATTAGCACCCAGC
LOC_Os02g08440
OsAffx.24166.1.S1_at--1052--7871Chr02:4543111..4543135 (25 bp)
GGTTAAGCCCAAGGTGCTCGTCGAG
LOC_Os02g08440
OsAffx.24166.1.S1_at--980--4031Chr02:4543132..4543156 (25 bp)
CGAGGAGGACTTCTTTCACCAGCAG
LOC_Os02g08440
OsAffx.24166.1.S1_at--471--9671Chr02:4543147..4543171 (25 bp)
TCACCAGCAGCCTCTCAAGAAAGAC
LOC_Os02g08440
OsAffx.24166.1.S1_at--836--1411Chr02:4543164..4543297 (25 bp)
AGAAAGACCCAGAGGTTGCGGCGCT
LOC_Os02g08440
OsAffx.24166.1.S1_at--127--9051Chr02:4543381..4543405 (25 bp)
TGCAGAGCCAGTTCAGCGACATGGT
LOC_Os02g08440
OsAffx.24166.1.S1_at--504--5411NONE
GAAGCGACTGAACGAGAGCCTCTAC
NONE
OsAffx.24166.1.S1_at--559--6671NONE
GTTCCATAGGTATACGTCATCGAGG
NONE
Target Sequence 
TTCTCTCCTTGGCTCAGCTTGACATCGTCGGAGCAGCAGAAAAGTTTGCTCGATCGAGCTAGCTAACTAGGTCGTCGGAT
CAGTGATAAATCGTTCGCCGATGGATCCGTGGATTAGCACCCAGCCTTCGCTGAGCCTGGACCTCCGCGTCGGGCTGCCG
GCGACGGCGGCCGTCGCCATGGTTAAGCCCAAGGTGCTCGTCGAGGAGGACTTCTTTCACCAGCAGCCTCTCAAGAAAGA
CCCAGAGGTTGCGGCGCTGGAGGCGGAGCTGAAGCGGATGGGCGCGGAGAACCGGCAGCTGAGCGAGATGCTGGCGGCGG
TGGCGGCCAAGTACGAGGCGCTGCAGAGCCAGTTCAGCGACATGGTCACCGCCAGCGCCAACAACGGCGGCGGCGGCGGC
AACAACCCGTCGTCCACCTCCGAGGGCGGGTCCCTTCTGCCCTCCAGGAAGCGACTGAACGAGAGCCTCTACTTGTTCCA
TAGGTATACGTCATCGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis