Browse Element(s) Details


OsAffx.242.1.S1_at

Description gb:NM_195999.1
DB_XREF= gi:37533357
TID=OsAffx.242.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative 22 kDa kafirin cluster; Ty3-Gypsy type (OSJNAb0075K12.33), mRNA.
PROD=putative 22 kDa kafirin cluster; Ty3-Gypsy type
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2135011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g231701/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21340OsAffx.32219.1.S1_x_at11/1110+10574530..10578117NAD, putative
LOC_Os10g21340OsAffx.32221.1.S1_s_at11/1110+10574530..10578117NAD, putative
LOC_Os10g21340Os.26596.1.S1_s_at11/1110+10574530..10578117NAD, putative
LOC_Os10g21340OsAffx.32241.1.S1_x_at10/1110+10574530..10578117NAD, putative
LOC_Os10g21340OsAffx.32220.1.S1_s_at9/1110+10574530..10578117NAD, putative
LOC_Os10g21350OsAffx.242.1.S1_at11/1110+10590023..10594592retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g21360Os.15305.1.S1_at11/1110+10600802..10607988N-dimethylguanosine tRNA methyltransferase, putative, expressed
LOC_Os10g21380OsAffx.20464.1.S1_at11/1110+10611540..10613605retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g21390OsAffx.30478.1.S1_at11/1110+10613944..10615648hypothetical protein
LOC_Os10g21390OsAffx.4262.1.S1_at1/1110+10613944..10615648hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.242.1.S1_at--798--311Chr10:10594044..10594068 (25 bp)
ATACGGAAACGACTGCAAACTGCTC
LOC_Os10g21350
OsAffx.242.1.S1_at--190--6511Chr10:10594201..10594225 (25 bp)
GATATGTTGGACCATTTGCCATCGT
LOC_Os10g21350
OsAffx.242.1.S1_at--1053--5831Chr10:10594210..10594234 (25 bp)
GACCATTTGCCATCGTCAAGCGAAT
LOC_Os10g21350
OsAffx.242.1.S1_at--1016--5531Chr10:10594256..10594280 (25 bp)
GAAACTACCAGATGCTTTGATCGGA
LOC_Os10g21350
OsAffx.242.1.S1_at--856--711Chr10:10594305..10594329 (25 bp)
ATGATTCGTAAATGCCTTCGGAGGC
LOC_Os10g21350
OsAffx.242.1.S1_at--691--6452Chr10:10594335..10594359 (25 bp)
GATCAAGTTGAAATTCCTATGGCTG
LOC_Os10g21350
OsAffx.242.1.S1_at--68--3711Chr10:10594351..10594375 (25 bp)
CTATGGCTGAGTTGCGTAACGATTT
LOC_Os10g21350
OsAffx.242.1.S1_at--731--9271Chr10:10594391..10594415 (25 bp)
TCCTGTTTGCATTCTGGATACTAAA
LOC_Os10g21350
OsAffx.242.1.S1_at--795--371Chr10:10594468..10594492 (25 bp)
ATCACACTCAAGATGAGGCCACATG
LOC_Os10g21350
OsAffx.242.1.S1_at--856--5473Chr10:10594517..10594541 (25 bp)
GAACTATCCTCAGTTTTTCCATCAC
LOC_Os10g21350
OsAffx.242.1.S1_at--741--3432Chr10:10594527..10594551 (25 bp)
CAGTTTTTCCATCACCAAGGTACAA
LOC_Os10g21350
Target Sequence 
ATACGGAAACGACTGCAAACTGCTCAAAATAGACAGAAAAGTTATGTAGATAATAGGAGAAGGGATCTTCGTTTTGATAT
AGGTGACTGGGTATATTTAAAAGTATCACCTATGAAGGGAGTTAAGCGATTTGGACTTGGGAAAAAATTAAGTCCCAGAT
ATGTTGGACCATTTGCCATCGTCAAGCGAATTGGAGAGGTTGCTTACAAGGTGAAACTACCAGATGCTTTGATCGGAGTA
CATGATGTATTTCACATCTCCATGATTCGTAAATGCCTTCGGAGGCCAAGTGATCAAGTTGAAATTCCTATGGCTGAGTT
GCGTAACGATTTAACATATCAAGAATATCCTGTTTGCATTCTGGATACTAAAGATGGAAAAACAAGAAACCGAAACATTC
GATTTTTAAAGGTACAATGGAGTCATCACACTCAAGATGAGGCCACATGGGAGAAGGAAGATGATTTGCAAAAGAACTAT
CCTCAGTTTTTCCATCACCAAGGTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.242.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis