Browse Element(s) Details


OsAffx.24209.1.S1_at

Description tigr:9630.m01111
TID=OsAffx.24209.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1225010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12220NANA2+6366274..6369534retrotransposon protein, putative, unclassified
LOC_Os02g12230OsAffx.11999.1.S1_at7/112+6374629..6375930hypothetical protein
LOC_Os02g12240OsAffx.2692.1.S1_at2/112+6376517..6377029hypothetical protein
LOC_Os02g12250OsAffx.24209.1.S1_at10/112+6382076..6382927expressed protein
LOC_Os02g12260OsAffx.2583.1.S1_at10/112+6385765..6387143hypothetical protein
LOC_Os02g12270NANA2+6387518..6387859hypothetical protein
LOC_Os02g12280OsAffx.24211.1.S1_at11/112+6389914..6391121hypothetical protein
LOC_Os02g12290OsAffx.2584.1.S1_at11/112+6397342..6399236Nuclear ribonuclease Z, putative
LOC_Os02g12300Os.53956.1.S1_at11/112+6399412..6402186Pectate lyase precursor, putative, expressed
LOC_Os02g12300OsAffx.18481.1.S1_x_at1/112+6399412..6402186Pectate lyase precursor, putative, expressed
LOC_Os02g12310Os.39041.1.S1_s_at11/112+6404019..6405861No apical meristem protein, expressed
LOC_Os02g12310Os.10944.1.S1_at10/112+6404019..6405861No apical meristem protein, expressed
LOC_Os02g12320NANA2+6406853..6415392retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24209.1.S1_at--1075--3031Chr02:6382162..6382186 (25 bp)
AATCCTACTGATGTCGTCGCTCTTG
LOC_Os02g12250
OsAffx.24209.1.S1_at--630--8871Chr02:6382170..6382194 (25 bp)
TGATGTCGTCGCTCTTGCTGTCGCC
LOC_Os02g12250
OsAffx.24209.1.S1_at--256--5391Chr02:6382249..6382273 (25 bp)
GAAGCACGATGATGGCCATCTGGTT
LOC_Os02g12250
OsAffx.24209.1.S1_at--525--6231Chr02:6382259..6382283 (25 bp)
GATGGCCATCTGGTTATTGCTCCAA
LOC_Os02g12250
OsAffx.24209.1.S1_at--862--4431Chr02:6382263..6382287 (25 bp)
GCCATCTGGTTATTGCTCCAAGAAA
LOC_Os02g12250
OsAffx.24209.1.S1_at--517--5511Chr02:6382284..6382308 (25 bp)
GAAAATTGACATGGCCTCGTCGAGT
LOC_Os02g12250
OsAffx.24209.1.S1_at--3--4471Chr02:6382297..6382320 (24 bp)
GCCTCGTCGAGTTCTAAACTCTGGC
LOC_Os02g12250
OsAffx.24209.1.S1_at--334--6731NONE
GTTCTAAACTCTGGCGATCAACCGA
NONE
OsAffx.24209.1.S1_at--584--9831Chr02:6382311..6382734 (25 bp)
TAAACTCTGGCGATCAACCGAACCA
LOC_Os02g12250
OsAffx.24209.1.S1_at--403--1731Chr02:6382734..6382758 (25 bp)
ACGACCCGATACATAACTCTCCTAT
LOC_Os02g12250
OsAffx.24209.1.S1_at--1077--331Chr02:6382746..6382770 (25 bp)
ATAACTCTCCTATCTCCCCAGGAAG
LOC_Os02g12250
Target Sequence 
AATCCTACTGATGTCGTCGCTCTTGCTGTCGCCGCCGTTTCTTCTCGCCGACGGCTCATCAGGAGGAGGTAGCAGAGGCC
GGGAGATGAAGCACGATGATGGCCATCTGGTTATTGCTCCAAGAAAATTGACATGGCCTCGTCGAGTTCTAAACTCTGGC
GATCAACCGAACCACGACCCGATACATAACTCTCCTATCTCCCCAGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24209.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis