Browse Element(s) Details


OsAffx.24217.1.S1_at

Description tigr:9630.m01169
TID=OsAffx.24217.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=EIF4A protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1284011/11DEAD/DEAH box helicase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12820OsAffx.12011.1.S1_at11/112+6747298..6749884Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g12830OsAffx.24216.1.S1_at10/112+6751348..6752533hypothetical protein
LOC_Os02g12840OsAffx.24217.1.S1_at11/112+6769015..6778174DEAD/DEAH box helicase family protein
LOC_Os02g12850Os.9386.2.S1_x_at11/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12850Os.9386.1.S1_at8/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12850OsAffx.30412.1.S1_at1/112+6784175..6788332RNA recognition motif family protein, expressed
LOC_Os02g12860OsAffx.2587.1.S1_at11/112+6788990..6789840hypothetical protein
LOC_Os02g12870Os.25870.2.S1_a_at10/112+6791043..6795073membrane protein, putative, expressed
LOC_Os02g12880OsAffx.24218.1.S1_at11/112+6798696..6802474EF hand family protein, expressed
LOC_Os02g12880Os.9096.2.S1_a_at11/112+6798696..6802474EF hand family protein, expressed
LOC_Os02g12890Os.50611.1.S1_x_at11/112+6802706..6805314Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24217.1.S1_at--691--8631Chr02:6777586..6777610 (25 bp)
TGGGTTCTTCTCTGCTAGTATGTCC
LOC_Os02g12840
OsAffx.24217.1.S1_at--642--10051Chr02:6777601..6777625 (25 bp)
TAGTATGTCCCATGAAGCTCTTGAG
LOC_Os02g12840
OsAffx.24217.1.S1_at--803--8133Chr02:6777742..6777766 (25 bp)
GGACAAATTGTGTGGTCTTTTCGAC
LOC_Os02g12840
OsAffx.24217.1.S1_at--386--10352Chr02:6777792..6777816 (25 bp)
TTTTTGTCAACACTCGGCATCATGC
LOC_Os02g12840
OsAffx.24217.1.S1_at--731--7693Chr02:6777848..6777872 (25 bp)
GGGTACACTGTCTCAGCAATTCATG
LOC_Os02g12840
OsAffx.24217.1.S1_at--951--1231Chr02:6777912..6777936 (25 bp)
AGTTCCAGTCTGGATCATCCCGTAT
LOC_Os02g12840
OsAffx.24217.1.S1_at--634--1971Chr02:6777947..6777971 (25 bp)
ACTGATCTCCGTGGCATCGATGTTC
LOC_Os02g12840
OsAffx.24217.1.S1_at--894--4851Chr02:6778020..6778044 (25 bp)
GCTACCTCCGTCATGTTCAAAGTGG
LOC_Os02g12840
OsAffx.24217.1.S1_at--1065--7731Chr02:6778061..6778085 (25 bp)
GGTGTGGCCATCAGCTTCATAACTA
LOC_Os02g12840
OsAffx.24217.1.S1_at--821--10011Chr02:6778084..6778108 (25 bp)
TAGCACCGATGAGCGTGTGTTCTCT
LOC_Os02g12840
OsAffx.24217.1.S1_at--690--8671Chr02:6778099..6778123 (25 bp)
TGTGTTCTCTACCATCCAGAAGTTC
LOC_Os02g12840
Target Sequence 
TGGGTTCTTCTCTGCTAGTATGTCCCATGAAGCTCTTGAGATGTGCCGCAAGTACATGAATAAGCCTGTGGAAATCATTG
TGCCAAGAGATGAAGAACTTGAGGGTATCAATGTCAAGCAGTTCTATGTTAACGTTGAGAAGGAAGACTGTAAGCTGGAC
AAATTGTGTGGTCTTTTCGACACAATGGAAATCACACGGAGCATCATTTTTGTCAACACTCGGCATCATGCCAAGTCATT
GACAGAAAAGATTAGAGGCAAGGGGTACACTGTCTCAGCAATTCATGGAGGCATACACCAAAGAGCCAGAGACAAAGCTG
TTCAGGAGTTCCAGTCTGGATCATCCCGTATCCTCATCACCACTGATCTCCGTGGCATCGATGTTCTGCGTGCCCCTGCT
GCCATCTTCTACGATCTGCCGACGCAACCAGTCTGCTACCTCCGTCATGTTCAAAGTGGGCAGCATGGACGGAAGGGTGT
GGCCATCAGCTTCATAACTAGCACCGATGAGCGTGTGTTCTCTACCATCCAGAAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24217.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis