Browse Element(s) Details


OsAffx.24233.1.S1_at

Description tigr:9630.m01271
TID=OsAffx.24233.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1376011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13750NANA2+7402713..7410877retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g13760OsAffx.24233.1.S1_at11/112+7428762..7429193hypothetical protein
LOC_Os02g13770Os.54067.1.S1_at11/112+7431357..7433852transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g13780OsAffx.24234.2.S1_s_at9/112+7434644..7438310Leucine Rich Repeat family protein
LOC_Os02g13780OsAffx.24234.1.S1_x_at4/112+7434644..7438310Leucine Rich Repeat family protein
LOC_Os02g13780Os.46572.2.S1_x_at2/112+7434644..7438310Leucine Rich Repeat family protein
LOC_Os02g13790NANA2+7449739..7450231hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24233.1.S1_at--367--1511Chr02:7429085..7429109 (25 bp)
AGCAGTACCGCGTCGGTGGCCCCGA
LOC_Os02g13760
OsAffx.24233.1.S1_at--701--2951Chr02:7429029..7429053 (25 bp)
GAGTTGTACTACTCCCGGTGGGCGT
LOC_Os02g13760
OsAffx.24233.1.S1_at--763--7171Chr02:7428987..7429011 (25 bp)
GTCGGCGACTCCATCGGTAACGAAT
LOC_Os02g13760
OsAffx.24233.1.S1_at--467--7831Chr02:7428972..7428996 (25 bp)
GGTAACGAATCAACGGCAGTTTCAT
LOC_Os02g13760
OsAffx.24233.1.S1_at--311--8251Chr02:7428958..7428982 (25 bp)
GGCAGTTTCATCTCATCGTCGTCAA
LOC_Os02g13760
OsAffx.24233.1.S1_at--409--7211Chr02:7428941..7428965 (25 bp)
GTCGTCAACTCGTCATCGATCTCCT
LOC_Os02g13760
OsAffx.24233.1.S1_at--468--4031Chr02:7428925..7428949 (25 bp)
CGATCTCCTCTTCTTTAATTTTGCA
LOC_Os02g13760
OsAffx.24233.1.S1_at--737--3671Chr02:7428913..7428937 (25 bp)
CTTTAATTTTGCATTCGCATTCGCA
LOC_Os02g13760
OsAffx.24233.1.S1_at--107--111Chr02:7428895..7428919 (25 bp)
ATTCGCATCCATGGCGTGTGGTGGC
LOC_Os02g13760
OsAffx.24233.1.S1_at--171--5051Chr02:7428872..7428896 (25 bp)
GCAGAGTTCGAGTACAGGAACGACT
LOC_Os02g13760
OsAffx.24233.1.S1_at--336--951Chr02:7428857..7428881 (25 bp)
AGGAACGACTCGGTGATCAAGGTGA
LOC_Os02g13760
Target Sequence 
AGCAGTACCGCGTCGGTGGCCCCGACGGGTGGATCGCCCCGCCGCCGGAGGAGGAGGAGTTGTACTACTCCCGGTGGGCG
TCGTCCATCGCCTTCTACGTCGGCGACTCCATCGGTAACGAATCAACGGCAGTTTCATCTCATCGTCGTCAACTCGTCAT
CGATCTCCTCTTCTTTAATTTTGCATTCGCATTCGCATCCATGGCGTGTGGTGGCAGAGTTCGAGTACAGGAACGACTCG
GTGATCAAGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis