Browse Element(s) Details


OsAffx.24234.1.S1_x_at

Description tigr:9638.m01814
TID=OsAffx.24234.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Disease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g137804/11Leucine Rich Repeat family protein
LOC_Os04g156601/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13750NANA2+7402713..7410877retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g13760OsAffx.24233.1.S1_at11/112+7428762..7429193hypothetical protein
LOC_Os02g13770Os.54067.1.S1_at11/112+7431357..7433852transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g13780OsAffx.24234.2.S1_s_at9/112+7434644..7438310Leucine Rich Repeat family protein
LOC_Os02g13780OsAffx.24234.1.S1_x_at4/112+7434644..7438310Leucine Rich Repeat family protein
LOC_Os02g13780Os.46572.2.S1_x_at2/112+7434644..7438310Leucine Rich Repeat family protein
LOC_Os02g13790NANA2+7449739..7450231hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24234.1.S1_x_at--791--6512Chr10:10759468..10759492 (25 bp)
GATATTGCTTCTGCTCTAGAGTACC
NONE
OsAffx.24234.1.S1_x_at--245--6091Chr10:10759486..10759510 (25 bp)
GAGTACCTTCACAACCAATGCATTC
NONE
OsAffx.24234.1.S1_x_at--938--3012Chr10:10759502..10759526 (25 bp)
AATGCATTCCACCTGTTGTTCACTG
NONE
OsAffx.24234.1.S1_x_at--1092--6291Chr10:10759561..10759585 (25 bp)
GATGATGTTGCATGCGTCTGCGACT
NONE
OsAffx.24234.1.S1_x_at--825--4092Chr10:10759581..10759605 (25 bp)
CGACTTTGGTCTGGCAAGGTCAATT
NONE
OsAffx.24234.1.S1_x_at--1030--7071Chr10:10759599..10759623 (25 bp)
GTCAATTCGTGTTTATTCATCTGGA
NONE
OsAffx.24234.1.S1_x_at--965--7692Chr10:10759660..10759684 (25 bp)
GGGTCTATTGGGTACATTGCTCCTG
NONE
OsAffx.24234.1.S1_x_at--579--8192Chr10:10759989..10760013 (25 bp)
GGAAGACACCCTACCAATGAAATAT
NONE
OsAffx.24234.1.S1_x_at--284--191Chr10:10760012..10760036 (25 bp)
ATTTACTGATGGCTTGACACTCCGC
NONE
OsAffx.24234.1.S1_x_at--719--1451NONE
AGAAGACAGTTCCATCTCGATGCAA
NONE
OsAffx.24234.1.S1_x_at--1001--8011Chr10:10760755..10760779 (25 bp)
GGAGGGTATTCTCACATGTACGATA
NONE
Target Sequence 
GATATTGCTTCTGCTCTAGAGTACCTTCACAACCAATGCATTCCACCTGTTGTTCACTGCGATTTGAAGCCAAGCAATGT
ACTTTTCAACAATGATGATGTTGCATGCGTCTGCGACTTTGGTCTGGCAAGGTCAATTCGTGTTTATTCATCTGGAACTC
AAAGCATATCAACAAGTATGGCTGGGCCAAGGGGGTCTATTGGGTACATTGCTCCTGNNNANNNNATGGGCAGTCAAATC
TCAACTGAGGGTGATGTCTATAGTTATGGCATTATTCTTCTGGAAATGCTAACAGGAAGACACCCTACCAATGAAATATT
TACTGATGGCTTGACACTCCGCATGTATGTCAATGCATCACTTTCACAAATCAAAGACATACTTGACCCCAGGCTTATTC
CAGAAATGACAGAGCAACCTTCTAATCATACCCTGCAATTGCATGAACACAAGAAGACAGTTCCATCTCGATGCAAACTG
GGAGGGGTGGAGGGTATTCTCACATGTACGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24234.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis