Browse Element(s) Details


OsAffx.24247.1.S1_at

Description tigr:9630.m01343
TID=OsAffx.24247.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1445010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14430Os.27793.1.S1_at11/112+7938410..7939831Peroxidase 52 precursor, putative, expressed
LOC_Os02g14430Os.27793.1.S1_x_at11/112+7938410..7939831Peroxidase 52 precursor, putative, expressed
LOC_Os02g14440Os.15355.1.S1_x_at11/112+7948542..7950059Cationic peroxidase 1 precursor, putative, expressed
LOC_Os02g14450OsAffx.24247.1.S1_at10/112+7952133..7953676hypothetical protein
LOC_Os02g14460NANA2+7959781..7960983Peroxidase 52 precursor, putative
LOC_Os02g14470OsAffx.24248.1.S1_at11/112+7964708..7965138hypothetical protein
LOC_Os02g14480OsAffx.24249.1.S1_at10/112+7975700..7978621Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24247.1.S1_at--195--8011Chr02:7952342..7952366 (25 bp)
GGAGGAAACCCCATGGGCGCTGACA
LOC_Os02g14450
OsAffx.24247.1.S1_at--437--2171NONE
ACACGAGGTCCTCCAAGCGGCGAGT
NONE
OsAffx.24247.1.S1_at--1042--7531Chr02:7953018..7953042 (25 bp)
GTGGCGGCATTCGAGGTGTACAATA
LOC_Os02g14450
OsAffx.24247.1.S1_at--878--10151Chr02:7953041..7953065 (25 bp)
TATCTACTACCACCTGGCCATGGTG
LOC_Os02g14450
OsAffx.24247.1.S1_at--8--1631Chr02:7953088..7953112 (25 bp)
AGCTGGTTGGCATAAGCTCTCTCAG
LOC_Os02g14450
OsAffx.24247.1.S1_at--1094--671Chr02:7953123..7953147 (25 bp)
ATGACCCTAATGTCAGCCGAGTCTT
LOC_Os02g14450
OsAffx.24247.1.S1_at--80--4071Chr02:7953140..7953164 (25 bp)
CGAGTCTTCGGCAAGGTCGGATTCC
LOC_Os02g14450
OsAffx.24247.1.S1_at--779--7191Chr02:7953155..7953179 (25 bp)
GTCGGATTCCGCAATGAGGACATCA
LOC_Os02g14450
OsAffx.24247.1.S1_at--323--8331Chr02:7953211..7953235 (25 bp)
GGCTGCCTACCCATGTGTAGCTGTC
LOC_Os02g14450
OsAffx.24247.1.S1_at--536--5031Chr02:7953268..7953292 (25 bp)
GCAGACGACGCTGTTATCCCTTATC
LOC_Os02g14450
OsAffx.24247.1.S1_at--863--8051Chr02:7953319..7953343 (25 bp)
GGAGAAGAATTGTCGCCGCATCGCC
LOC_Os02g14450
Target Sequence 
GGAGGAAACCCCATGGGCGCTGACACGAGGTCCTCCAAGCGGCGAGTGGGACAGTGGCGGCATTCGAGGTGTACAATATC
TACTACCACCTGGCCATGGTGGCCTGGCGCCACCGCCTCGTGCAGCTGGTTGGCATAAGCTCTCTCAGCTCGTCCTCGAT
GACCCTAATGTCAGCCGAGTCTTCGGCAAGGTCGGATTCCGCAATGAGGACATCAAGCTCGCCATTCTCTGCCCATGCCG
CTCTTCGGCTGCCTACCCATGTGTAGCTGTCCGCCGCTTCTCTTCCTTTGCAGCTTCGCCGCCGCAGACGACGCTGTTAT
CCCTTATCCCACCGGGAACCTTGCCGGCTCGGGGGGAGAAGAATTGTCGCCGCATCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24247.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis