Browse Element(s) Details


OsAffx.24261.1.S1_at

Description tigr:9630.m01388
TID=OsAffx.24261.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1488011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14860OsAffx.12042.1.S1_s_at11/112+8262557..8265722KE2 family protein, expressed
LOC_Os02g14860Os.16117.1.S1_s_at11/112+8262557..8265722KE2 family protein, expressed
LOC_Os02g14870OsAffx.12043.1.S1_at11/112+8268232..8270188hypothetical protein
LOC_Os02g14880OsAffx.24261.1.S1_at11/112+8289301..8289687hypothetical protein
LOC_Os02g14890Os.52914.1.S1_at11/112+8292476..8293240expressed protein
LOC_Os02g14900OsAffx.24262.1.S1_at11/112+8299856..83171881,3-beta-glucan synthase component family protein, expressed
LOC_Os02g14900OsAffx.24262.1.S1_s_at11/112+8299856..83171881,3-beta-glucan synthase component family protein, expressed
LOC_Os02g14900Os.55106.1.S1_at11/112+8299856..83171881,3-beta-glucan synthase component family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24261.1.S1_at--1080--371Chr02:8289609..8289633 (25 bp)
ATCAACAGCAGTGGGCTCGGGAAGC
LOC_Os02g14880
OsAffx.24261.1.S1_at--147--4611Chr02:8289586..8289610 (25 bp)
GCGACGGATCGATGATGGGCATACA
LOC_Os02g14880
OsAffx.24261.1.S1_at--544--8391Chr02:8289512..8289536 (25 bp)
GGCGCCCACAATCACCGGGAACAAA
LOC_Os02g14880
OsAffx.24261.1.S1_at--922--2191Chr02:8289492..8289516 (25 bp)
ACAAAGTGGTGGATCGATCGACGGC
LOC_Os02g14880
OsAffx.24261.1.S1_at--207--3951Chr02:8289468..8289492 (25 bp)
CGGCATGCTCGAGAGGTAGCGAACT
LOC_Os02g14880
OsAffx.24261.1.S1_at--105--6031Chr02:8289458..8289482 (25 bp)
GAGAGGTAGCGAACTGGCAATCAAA
LOC_Os02g14880
OsAffx.24261.1.S1_at--447--2571Chr02:8289447..8289471 (25 bp)
AACTGGCAATCAAAGCGATGTGCTC
LOC_Os02g14880
OsAffx.24261.1.S1_at--558--3111Chr02:8289403..8289427 (25 bp)
AATTCAACAGCCACGGGCCCAGGAA
LOC_Os02g14880
OsAffx.24261.1.S1_at--685--1331Chr02:8289379..8289403 (25 bp)
AGAGGTGGATTCGACTATCGTGATT
LOC_Os02g14880
OsAffx.24261.1.S1_at--1139--2011Chr02:8289366..8289390 (25 bp)
ACTATCGTGATTGTCGGCACCGGCA
LOC_Os02g14880
OsAffx.24261.1.S1_at--146--9451Chr02:8289353..8289377 (25 bp)
TCGGCACCGGCAGATGGATGGCGAT
LOC_Os02g14880
Target Sequence 
ATCAACAGCAGTGGGCTCGGGAAGCGACGGATCGATGATGGGCATACAACGGGGAGCAGCAGATTCGACGGCTGCGCCCC
TCAAGAGTGGCGGCTTCGGCGCCCACAATCACCGGGAACAAAGTGGTGGATCGATCGACGGCGGCATGCTCGAGAGGTAG
CGAACTGGCAATCAAAGCGATGTGCTCGGGGAGGTGATGAATCAACAATTCAACAGCCACGGGCCCAGGAAGAGGTGGAT
TCGACTATCGTGATTGTCGGCACCGGCAGATGGATGGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis