Browse Element(s) Details


OsAffx.24278.1.S1_x_at

Description tigr:9630.m01535
TID=OsAffx.24278.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1648011/11hypothetical protein
LOC_Os11g221601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16450Os.50874.1.S1_at9/112+9391343..9393827expressed protein
LOC_Os02g16460OsAffx.5632.1.S1_x_at2/112+9400982..9402637retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16460OsAffx.5632.1.S1_at2/112+9400982..9402637retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16470NANA2+9404825..9405634retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16480OsAffx.24278.1.S1_at11/112+9407259..9407836hypothetical protein
LOC_Os02g16480OsAffx.24278.1.S1_x_at11/112+9407259..9407836hypothetical protein
LOC_Os02g16490Os.5930.1.S1_at1/112+9409105..9413550expressed protein
LOC_Os02g16490OsAffx.18631.1.A1_at1/112+9409105..9413550expressed protein
LOC_Os02g16490Os.5930.1.S1_x_at1/112+9409105..9413550expressed protein
LOC_Os02g16500Os.12412.1.S1_at11/112+9416886..9418700expressed protein
LOC_Os02g16510NANA2+9421771..9425121retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16520NANA2+9427302..9428320retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24278.1.S1_x_at--990--691Chr02:9407613..9407637 (25 bp)
ATGAGGACGATTTCAGCGAGGGCGA
LOC_Os02g16480
OsAffx.24278.1.S1_x_at--1002--1852Chr11:12234049..12234098 (25 bp)
ACGACGATGACAATGGAGACGACGA
LOC_Os11g22160
OsAffx.24278.1.S1_x_at--604--311Chr02:9407700..9407724 (25 bp)
ATACTACGGAGGAGGTGTCCGACGA
LOC_Os02g16480
OsAffx.24278.1.S1_x_at--678--6171Chr02:9407681..9407705 (25 bp)
GAGGAGGTGTCCAACGACGATACTA
LOC_Os02g16480
OsAffx.24278.1.S1_x_at--1037--1031Chr02:9407685..9407709 (25 bp)
AGGTGTCCAACGACGATACTACGGA
LOC_Os02g16480
OsAffx.24278.1.S1_x_at--1157--7231Chr02:9407689..9407713 (25 bp)
GTCCAACGACGATACTACGGAGGAG
LOC_Os02g16480
OsAffx.24278.1.S1_x_at--312--8011Chr02:9407758..9407782 (25 bp)
GGAGGACGACCTTGAAGACGATGAC
LOC_Os02g16480
OsAffx.24278.1.S1_x_at--1134--951Chr02:9407760..9407784 (25 bp)
AGGACGACCTTGAAGACGATGACAA
LOC_Os02g16480
OsAffx.24278.1.S1_x_at--483--5771Chr02:9407762..9407786 (25 bp)
GACGACCTTGAAGACGATGACAAGT
LOC_Os02g16480
OsAffx.24278.1.S1_x_at--278--4051Chr02:9407776..9407800 (25 bp)
CGATGACAAGTCCTCTTCTGATGAT
LOC_Os02g16480
OsAffx.24278.1.S1_x_at--617--671Chr02:9407778..9407802 (25 bp)
ATGACAAGTCCTCTTCTGATGATGA
LOC_Os02g16480
Target Sequence 
ATGAGGACGATTTCAGCGAGGGCGAGAAGGAGTCTGAGGAGGACGACGATGACAATGGAGACGACGAGGAGGAGGTGTCC
AACGACGATACTACGGAGGAGGTGTCCGACGAGGAGGAGGTGTCCAACGACGATACTACGGAGGAGGAGGACGACCTTGA
AGACGATGACAAGTCCTCTTCTGATGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24278.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis