Browse Element(s) Details


OsAffx.24290.1.S1_at

Description tigr:9630.m01614
TID=OsAffx.24290.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1726011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17220OsAffx.12084.1.S1_at11/112+9871117..9871782transposon protein, putative, unclassified
LOC_Os02g17230OsAffx.24289.1.S1_at10/112+9877603..9879274flavin-containing monooxygenase, putative
LOC_Os02g17230OsAffx.30914.1.S1_x_at1/112+9877603..9879274flavin-containing monooxygenase, putative
LOC_Os02g17240Os.8089.1.S1_at11/112+9885607..9888391pollen-specific kinase partner protein, putative, expressed
LOC_Os02g17250Os.18074.1.A1_at11/112+9888628..9893606expressed protein
LOC_Os02g17260OsAffx.24290.1.S1_at11/112+9894795..9895713hypothetical protein
LOC_Os02g17270OsAffx.24291.1.S1_at11/112+9898845..9899207hypothetical protein
LOC_Os02g17280Os.51013.1.S1_s_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17280Os.51013.1.S1_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17280Os.52125.1.S1_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17292Os.50288.2.S1_at11/112+9912535..9919767retrotransposon protein, putative, unclassified, expressed
LOC_Os02g17292Os.50288.1.S1_at9/112+9912535..9919767retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24290.1.S1_at--839--1791Chr02:9895656..9895680 (25 bp)
ACGCCTGGTAGGACCGACTTCGACA
LOC_Os02g17260
OsAffx.24290.1.S1_at--741--5131Chr02:9895605..9895629 (25 bp)
GCAAATGATATTGACCCAGACAACA
LOC_Os02g17260
OsAffx.24290.1.S1_at--1048--3391Chr02:9895589..9895613 (25 bp)
CAGACAACATCATCCCAGTAACGTT
LOC_Os02g17260
OsAffx.24290.1.S1_at--113--4891Chr02:9895495..9895519 (25 bp)
GCTTTCATTCATATTGACCCGGCAA
LOC_Os02g17260
OsAffx.24290.1.S1_at--98--10231Chr02:9895484..9895508 (25 bp)
TATTGACCCGGCAAGGTACAGTAAT
LOC_Os02g17260
OsAffx.24290.1.S1_at--834--7091Chr02:9895446..9895470 (25 bp)
GTCACTTTCCCACTCGATGATGAAG
LOC_Os02g17260
OsAffx.24290.1.S1_at--266--5511Chr02:9895421..9895445 (25 bp)
GAACAAGTTCTCCTAAAGATGCCGA
LOC_Os02g17260
OsAffx.24290.1.S1_at--15--6071Chr02:9895362..9895386 (25 bp)
GAGTTCCACACTTTACAAGATCGCA
LOC_Os02g17260
OsAffx.24290.1.S1_at--653--10131Chr02:9895320..9895344 (25 bp)
TATGCATTGATCAATCAGTCGGGAG
LOC_Os02g17260
OsAffx.24290.1.S1_at--1000--7191Chr02:9895303..9895327 (25 bp)
GTCGGGAGTGCTTGTTAATACTTTA
LOC_Os02g17260
OsAffx.24290.1.S1_at--584--9771Chr02:9895207..9895231 (25 bp)
TAAGGGTGTTTTTCCACAATACAGG
LOC_Os02g17260
Target Sequence 
ACGCCTGGTAGGACCGACTTCGACAAGGTTTTCATCATGGTTGATATCAAAGCAAATGATATTGACCCAGACAACATCAT
CCCAGTAACGTTGGATAAGCTAACAGAAGAACAAAAGGCGAATCTGGAGCAGATGATGAACCAATTGCAAAATAAGTATT
TGCTTTCATTCATATTGACCCGGCAAGGTACAGTAATTCAAAGACACAAAGTCACTTTCCCACTCGATGATGAAGGAACA
AGTTCTCCTAAAGATGCCGAGCCCAAGGGTGAGAAACCAGAGGGAGATCCTGAAGAGTTCCACACTTTACAAGATCGCAT
TGATTATGCTATTCATTATGCATTGATCAATCAGTCGGGAGTGCTTGTTAATACTTTAACTAATATGATCAAATTTGTAG
TTGATGGCACAATAACTGAGCATCAAGCTAAGGGGCCAGTTTTCCTTCCTAAGGGTGTTTTTCCACAATACAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis