Browse Element(s) Details


OsAffx.24314.1.S1_at

Description tigr:9630.m01799
TID=OsAffx.24314.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1893011/11Calcineurin B-like protein 4, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18900NANA2+11031487..11036664retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g18910OsAffx.12110.1.S1_at10/112+11042928..11043707hypothetical protein
LOC_Os02g18920NANA2+11050815..11051625hypothetical protein
LOC_Os02g18930OsAffx.24314.1.S1_at11/112+11057582..11059929Calcineurin B-like protein 4, putative
LOC_Os02g18940Os.19378.1.S1_at11/112+11066131..11067378expressed protein
LOC_Os02g18954Os.54094.1.S1_at10/112+11071693..11077519GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g18954Os.32544.1.S1_at1/112+11071693..11077519GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g18954Os.50295.1.S1_at1/112+11071693..11077519GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g18970NANA2+11083113..11086850retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0006499biological_processN-terminal protein myristoylation
GO:0006950biological_processresponse to stress
GO:0006970biological_processresponse to osmotic stress
GO:0009738biological_processabscisic acid mediated signaling
GO:0019722biological_processcalcium-mediated signaling
GO:0030007biological_processpotassium ion homeostasis
GO:0042539biological_processhypotonic salinity response
GO:0005886cellular_componentplasma membrane
GO:0005955cellular_componentcalcineurin complex
GO:0008287cellular_componentprotein serine/threonine phosphatase complex
GO:0004723molecular_functioncalcium-dependent protein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24314.1.S1_at--17--10311Chr02:11059404..11059556 (25 bp)
TTTCGCCAATCGGAACCTGTTCTTA
LOC_Os02g18930
OsAffx.24314.1.S1_at--863--3011Chr02:11059373..11059397 (25 bp)
AATGCTGACAGTGTTTCACCACAAG
LOC_Os02g18930
OsAffx.24314.1.S1_at--912--5391Chr02:11059323..11059347 (25 bp)
GAAGCGCAACGGTGTTATCGATTTC
LOC_Os02g18930
OsAffx.24314.1.S1_at--591--10831Chr02:11059148..11059277 (25 bp)
TTGGGAGACAAGATTGCCTTATTCT
LOC_Os02g18930
OsAffx.24314.1.S1_at--341--4451Chr02:11059133..11059153 (21 bp)
GCCTTATTCTTTTTTGTAGTTGCAT
LOC_Os02g18930
OsAffx.24314.1.S1_at--626--9031Chr02:11058679..11058703 (25 bp)
TGCACGAAATGGTGCTTGCTCTTCT
LOC_Os02g18930
OsAffx.24314.1.S1_at--780--6371Chr02:11058414..11058438 (25 bp)
GATCGACCCCGATGAATGGAAAACG
LOC_Os02g18930
OsAffx.24314.1.S1_at--167--5491Chr02:11058360..11058384 (25 bp)
GAACATGACTCTTCCATACCTAAAG
LOC_Os02g18930
OsAffx.24314.1.S1_at--845--8131Chr02:11057932..11057956 (25 bp)
GGACATAACCATGGTATTCCCCAGC
LOC_Os02g18930
OsAffx.24314.1.S1_at--428--6871Chr02:11057919..11057943 (25 bp)
GTATTCCCCAGCTTTATTCTGAACT
LOC_Os02g18930
OsAffx.24314.1.S1_at--1082--6851Chr02:11057671..11057691 (21 bp)
GTTTGTCACGATGATATCTCTGATG
LOC_Os02g18930
Target Sequence 
TTTCGCCAATCGGAACCTGTTCTTATGTGAAAATGCTGACAGTGTTTCACCACAAGTGCAGATATTTGATCTCTTTGATC
TGAAGCGCAACGGTGTTATCGATTTCGGGGAGTTCGTTCGATCCCTCAGCATTTTTCACCCGGAAACGCCTTTGGGAGAC
AAGATTGCCTTATTCTTTTTTGTAGTTGCATTTAGGTTGTATGACCTGAGAGGAACTGGATGCATTGAACGTGAAGAGTT
GCACGAAATGGTGCTTGCTCTTCTGAATGAATCAGATCTATTCCTATCTGAAGAAGCTGTAGAACAAATCGTGGATCAGA
CGTTCAAGCAAGCAGACTTAAACGATGACGGGAAGATCGACCCCGATGAATGGAAAACGTTTGCGAGTAAAAACCCGGCT
TTGCTGAAGAACATGACTCTTCCATACCTAAAGGACATAACCATGGTATTCCCCAGCTTTATTCTGAACTCTGAAGTTTG
TCACGATGATATCTCTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis