Browse Element(s) Details


OsAffx.24339.1.S1_at

Description tigr:9630.m01925
TID=OsAffx.24339.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2013011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20100OsAffx.1646.1.S1_x_at1/112+11834516..11840838retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g20110Os.20978.1.S1_at1/112+11842658..11853298retrotransposon protein, putative, unclassified
LOC_Os02g20110OsAffx.7789.1.S1_x_at1/112+11842658..11853298retrotransposon protein, putative, unclassified
LOC_Os02g20120Os.27066.1.A1_x_at1/112+11854049..11857200hypothetical protein
LOC_Os02g20130OsAffx.24339.1.S1_at11/112+11860593..11860978hypothetical protein
LOC_Os02g20140OsAffx.24340.1.S1_at11/112+11862409..11869636Protein kinase domain containing protein
LOC_Os02g20140Os.5644.1.S1_at1/112+11862409..11869636Protein kinase domain containing protein
LOC_Os02g20150OsAffx.24341.1.S1_at11/112+11875272..11876018hypothetical protein
LOC_Os02g20160OsAffx.12127.1.S1_at10/112+11876578..11880148pentatricopeptide, putative
LOC_Os02g20170Os.11772.1.S1_at11/112+11882302..11885739expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24339.1.S1_at--1143--3791Chr02:11860924..11860948 (25 bp)
CTCGCCCTTGTGCTGTTGTCATCAA
LOC_Os02g20130
OsAffx.24339.1.S1_at--76--2231Chr02:11860780..11860804 (25 bp)
ACAAGTTAGCAAATGCATCCGCAGA
LOC_Os02g20130
OsAffx.24339.1.S1_at--710--3031Chr02:11860745..11860769 (25 bp)
AATCCAGAGGCTGATTGTTCTCCAG
LOC_Os02g20130
OsAffx.24339.1.S1_at--12--6611Chr02:11860733..11860757 (25 bp)
GATTGTTCTCCAGCAGTTATTATGA
LOC_Os02g20130
OsAffx.24339.1.S1_at--408--7771Chr02:11860706..11860730 (25 bp)
GGTGACAAGTGTATCCCCAATGTTT
LOC_Os02g20130
OsAffx.24339.1.S1_at--1100--6891Chr02:11860696..11860720 (25 bp)
GTATCCCCAATGTTTGCCTACATAA
LOC_Os02g20130
OsAffx.24339.1.S1_at--496--6851Chr02:11860685..11860709 (25 bp)
GTTTGCCTACATAAGTGCCTTGCAT
LOC_Os02g20130
OsAffx.24339.1.S1_at--1005--2851Chr02:11860673..11860697 (25 bp)
AAGTGCCTTGCATTGGGTGCTGCAA
LOC_Os02g20130
OsAffx.24339.1.S1_at--666--8231Chr02:11860646..11860670 (25 bp)
GGCAACTGCATTGAAGGGCCAGCAT
LOC_Os02g20130
OsAffx.24339.1.S1_at--619--7551Chr02:11860631..11860655 (25 bp)
GGGCCAGCATGCAATTGTGATTTCT
LOC_Os02g20130
OsAffx.24339.1.S1_at--37--671Chr02:11860623..11860647 (25 bp)
ATGCAATTGTGATTTCTGCGGACCT
LOC_Os02g20130
Target Sequence 
CTCGCCCTTGTGCTGTTGTCATCAAACAAGTTAGCAAATGCATCCGCAGAAAGCAACATCAATCCAGAGGCTGATTGTTC
TCCAGCAGTTATTATGATTGGTGACAAGTGTATCCCCAATGTTTGCCTACATAAGTGCCTTGCATTGGGTGCTGCAAGAG
GCAACTGCATTGAAGGGCCAGCATGCAATTGTGATTTCTGCGGACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24339.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis