Browse Element(s) Details


OsAffx.24346.1.S1_at

Description tigr:9630.m01972
TID=OsAffx.24346.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2060011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20550OsAffx.2698.1.S1_at11/112+12123596..12123874hypothetical protein
LOC_Os02g20560Os.17961.1.S1_a_at11/112+12127922..12129229Fasciclin domain containing protein, expressed
LOC_Os02g20570Os.46785.2.S1_x_at4/112+12134248..12138246retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20570OsAffx.30226.2.S1_x_at2/112+12134248..12138246retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20570OsAffx.442.1.S1_x_at1/112+12134248..12138246retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20579NANA2+12140042..12140245NA
LOC_Os02g20590OsAffx.24346.1.S1_x_at2/112+12143092..12144153BTB/POZ domain containing protein
LOC_Os02g20600OsAffx.24346.1.S1_at11/112+12146389..12147621BTB/POZ domain containing protein
LOC_Os02g20600OsAffx.24346.1.S1_x_at11/112+12146389..12147621BTB/POZ domain containing protein
LOC_Os02g20609OsAffx.5031.3.S1_x_at1/112+12152903..12153193NA
LOC_Os02g20620OsAffx.24347.1.S1_at11/112+12153841..12154626MATH domain containing protein
LOC_Os02g20630NANA2+12155721..12158217retrotransposon protein, putative, unclassified
LOC_Os02g20640NANA2+12161799..12163679retrotransposon protein, putative, unclassified, expressed
LOC_Os02g20650Os.31845.1.S1_x_at1/112+12167600..12171826hypothetical protein
LOC_Os02g20660OsAffx.22699.1.S1_x_at4/112+12172293..12177893retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24346.1.S1_at--604--5171Chr02:12147081..12147105 (25 bp)
GCAAGGGAAATAACCATGGATCTTC
LOC_Os02g20600
OsAffx.24346.1.S1_at--785--3071Chr02:12146655..12147097 (25 bp)
AATAACCATGGATCTTCAAAACTTG
LOC_Os02g20600
OsAffx.24346.1.S1_at--1107--5331Chr02:12146631..12146655 (25 bp)
GAAGATTTGGGTTGAAACTTTTGAT
LOC_Os02g20600
OsAffx.24346.1.S1_at--653--6491Chr02:12146609..12146633 (25 bp)
GATAGTTTGTGTTATAATTTTGAGA
LOC_Os02g20600
OsAffx.24346.1.S1_at--150--8051Chr02:12146462..12146486 (25 bp)
GGAGATCCAATAAAGATACCAGAAA
LOC_Os02g20600
OsAffx.24346.1.S1_at--1119--5531Chr02:12146435..12146459 (25 bp)
GAAAGGAAATGGTGTTCTGCACCCA
LOC_Os02g20600
OsAffx.24346.1.S1_at--864--5571Chr02:12146430..12146454 (25 bp)
GAAATGGTGTTCTGCACCCATGGAC
LOC_Os02g20600
OsAffx.24346.1.S1_at--21--811Chr02:12146427..12146451 (25 bp)
ATGGTGTTCTGCACCCATGGACGGA
LOC_Os02g20600
OsAffx.24346.1.S1_at--1003--8791Chr02:12146423..12146447 (25 bp)
TGTTCTGCACCCATGGACGGATCTA
LOC_Os02g20600
OsAffx.24346.1.S1_at--930--10591Chr02:12146421..12146445 (25 bp)
TTCTGCACCCATGGACGGATCTACA
LOC_Os02g20600
OsAffx.24346.1.S1_at--450--3851Chr02:12146419..12146443 (25 bp)
CTGCACCCATGGACGGATCTACAGT
LOC_Os02g20600
Target Sequence 
GCAAGGGAAATAACCATGGATCTTCAAAACTTGAAGATTTGGGTTGAAACTTTTGATAGTTTGTGTTATAATTTTGAGAA
TTATAAGAAGTTCTGGAGATCCAATAAAGATACCAGAAAAGGAAAGGAAATGGTGTTCTGCACCCATGGACGGATCTACA
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24346.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis