Browse Element(s) Details


OsAffx.24371.1.S1_at

Description tigr:9630.m02064
TID=OsAffx.24371.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2153011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21500OsAffx.22314.1.S1_x_at1/112+12751822..12754543hypothetical protein
LOC_Os02g21510Os.54297.1.S1_at11/112+12758247..12762201NOL1/NOP2/sun family protein, putative, expressed
LOC_Os02g21520Os.17608.1.S1_s_at11/112+12765278..12772006chalcone isomerase 3, putative, expressed
LOC_Os02g21520OsAffx.24370.1.S1_at10/112+12765278..12772006chalcone isomerase 3, putative, expressed
LOC_Os02g21530OsAffx.24371.1.S1_at11/112+12777845..12778813expressed protein
LOC_Os02g21540OsAffx.12149.1.S1_at11/112+12780483..12782727hypothetical protein
LOC_Os02g21550Os.57408.1.S1_at11/112+12788664..12790742oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g21560NANA2+12798340..12804725retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24371.1.S1_at--533--4151Chr02:12777891..12777915 (25 bp)
CGCCGCTCTTTGTCGTCAGAGGCGA
LOC_Os02g21530
OsAffx.24371.1.S1_at--93--7231Chr02:12777934..12777958 (25 bp)
GTCGAAGCCGGAGGCGCTACCGTTC
LOC_Os02g21530
OsAffx.24371.1.S1_at--816--4851Chr02:12777949..12777973 (25 bp)
GCTACCGTTCCAGGCGCAGAGCTTT
LOC_Os02g21530
OsAffx.24371.1.S1_at--1101--3411Chr02:12777965..12777989 (25 bp)
CAGAGCTTTGGCCAGTTACAGTTCG
LOC_Os02g21530
OsAffx.24371.1.S1_at--61--10491Chr02:12777980..12778004 (25 bp)
TTACAGTTCGCCCAGAAACCTGCTG
LOC_Os02g21530
OsAffx.24371.1.S1_at--340--2831Chr02:12778043..12778067 (25 bp)
AAGTTCAGGCACGAAGTTGATCCAG
LOC_Os02g21530
OsAffx.24371.1.S1_at--408--9151Chr02:12778088..12778112 (25 bp)
TGCGCACCGAAGCTCGTCAGGCTGC
LOC_Os02g21530
OsAffx.24371.1.S1_at--301--1771Chr02:12778124..12778148 (25 bp)
ACCTGCAGCACTTCGGCGGTGGAGC
LOC_Os02g21530
OsAffx.24371.1.S1_at--980--4451Chr02:12778311..12778335 (25 bp)
GCCTCATCCTGTACGACGAGCATGG
LOC_Os02g21530
OsAffx.24371.1.S1_at--432--7531Chr02:12778347..12778371 (25 bp)
GTGGCACCACGCCTGGCAGAAGCTA
LOC_Os02g21530
OsAffx.24371.1.S1_at--359--10171Chr02:12778704..12778724 (21 bp)
TATCATAGATTCAGAGCTCAGTGGA
LOC_Os02g21530
Target Sequence 
CGCCGCTCTTTGTCGTCAGAGGCGACCGCCGGCCGCCGCTGCGGTCGAAGCCGGAGGCGCTACCGTTCCAGGCGCAGAGC
TTTGGCCAGTTACAGTTCGCCCAGAAACCTGCTGCAGGCAGAGCAGACAGCAGCAGATCAGGACATGAGACGAAGTTCAG
GCACGAAGTTGATCCAGGAGTGCTGGACAGGAGGCGCTGCGCACCGAAGCTCGTCAGGCTGCCGTGCCGGAGCACCTGCA
GCACTTCGGCGGTGGAGCCCGTCACGGCGGAGGAGAGGCCCCTGGCCCCGTCGGCGACAAAGGCGCCGCCGCAGGAGGGG
AGCAGGACGCCGATGGTGGCGCCGCCGATGACGCCGATGAGGCCGGTGTGGCAGCGGAGGATACTGATGGGGATGCGGTG
CGAGCTGCCGCGGTTCAGCGGCCTCATCCTGTACGACGAGCATGGCCGCCCAATCCGTGGCACCACGCCTGGCAGAAGCT
ACCCCCAGATATATCATAGATTCAGAGCTCAGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis