Browse Element(s) Details


OsAffx.24379.1.S1_at

Description tigr:9630.m02113
TID=OsAffx.24379.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g220009/11phosphoglycerate mutase family protein
LOC_Os11g043001/11phosphoglycerate mutase family protein, expressed
LOC_Os12g041101/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21960NANA2+13056046..13057224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21970Os.11446.1.S1_at10/112+13059121..1306384826S protease regulatory subunit 6B homolog, putative, expressed
LOC_Os02g21980NANA2+13068447..13075373retrotransposon, putative, centromere-specific
LOC_Os02g21990NANA2+13076893..13077966retrotransposon, putative, centromere-specific
LOC_Os02g22000OsAffx.24379.1.S1_at9/112+13081998..13085777phosphoglycerate mutase family protein
LOC_Os02g22010OsAffx.2715.1.S1_at11/112+13093976..13094245hypothetical protein
LOC_Os02g22020Os.51945.1.S1_at10/112+13096084..13098214expressed protein
LOC_Os02g22030Os.53479.1.S1_x_at1/112+13101419..13104476retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22040OsAffx.20387.1.S1_x_at1/112+13105122..13109885retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24379.1.S1_at--558--4331NONE
CCATGTCACGGCCTGATGTAGTCAC
NONE
OsAffx.24379.1.S1_at--1024--6271Chr02:13083390..13083414 (25 bp)
GATGTAGTCACCTCCTTGACAAACA
LOC_Os02g22000
OsAffx.24379.1.S1_at--1135--6311Chr02:13083428..13083452 (25 bp)
GATGAATTTTATCCCTACTAGCAAA
LOC_Os02g22000
OsAffx.24379.1.S1_at--104--5111NONE
GCAACGGGTTATTTCTTTGGCTGAA
NONE
OsAffx.24379.1.S1_at--1020--1632Chr02:13084731..13084755 (25 bp)
AGCGTCGATTTGGAGCTGGCATCTC
LOC_Os02g22000
OsAffx.24379.1.S1_at--456--5971Chr02:13084923..13084947 (25 bp)
GAGAAGCTAGGCCAACTGTTGTATA
LOC_Os02g22000
OsAffx.24379.1.S1_at--252--7674Chr02:13085113..13085175 (25 bp)
GGGATATCTGCAAGGCGTTTTCAAA
LOC_Os02g22000
OsAffx.24379.1.S1_at--211--1431Chr02:13085221..13085555 (25 bp)
AGAAACCAAGAATTGCCGCTGCTAT
LOC_Os02g22000
OsAffx.24379.1.S1_at--179--4211Chr02:13085548..13085570 (23 bp)
CCGCTGCTATCCTACCAATTAAGAA
LOC_Os02g22000
OsAffx.24379.1.S1_at--1147--5452Chr02:13085568..13085592 (25 bp)
GAACTCTGAACCTTGAAGATGTTTT
LOC_Os02g22000
OsAffx.24379.1.S1_at--1138--6612Chr02:13085609..13085633 (25 bp)
GTTGTCGGCTATGGTGCAGCCATAT
LOC_Os02g22000
Target Sequence 
CCATGTCACGGCCTGATGTAGTCACCTCCTTGACAAACATACCCCAAGGGAAGATGAATTTTATCCCTACTAGCAAAAAT
GCTCGTGCGTTGCAACGGGTTATTTCTTTGGCTGAAGCGTCGATTTGGAGCTGGCATCTCAGAGAAGCTAGGCCAACTGT
TGTATACTTGTCTGATTTGAAGCGTGCTGTTGAGACTGCAGAAATCATAGAGAAAGCCTGTGATGTATCAAATATAGTGT
TGACTGAAGCACCAAGAGAAAGGCACATGGGATATCTGCAAGGCGTTTTCAAAGGCTTTGCTAATTTTGAAGTTAAAAAT
GGTTTGGACTTTGATGGCAGAAACCAAGAATTGCCGCTGCTATCCTACCAATTAAGAACTCTGAACCTTGAAGATGTTTT
GTTGATGCGGGTGATTGTTGTCGGCTATGGTGCAGCCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis