Browse Element(s) Details


OsAffx.24405.1.S1_at

Description tigr:9630.m02279
TID=OsAffx.24405.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2445011/11hypothetical protein
LOC_Os08g223703/11hypothetical protein
LOC_Os02g273702/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24380OsAffx.2727.1.S1_at8/112+14138340..14139351hypothetical protein
LOC_Os02g24390OsAffx.2728.1.S1_at11/112+14140046..14140988hypothetical protein
LOC_Os02g24390OsAffx.31091.1.S1_x_at1/112+14140046..14140988hypothetical protein
LOC_Os02g24400OsAffx.12170.1.S1_at11/112+14143743..14145052hypothetical protein
LOC_Os02g24400OsAffx.22442.1.S1_x_at1/112+14143743..14145052hypothetical protein
LOC_Os02g24410OsAffx.31083.3.S1_s_at11/112+14146692..14147775hypothetical protein
LOC_Os02g24420OsAffx.19776.1.S1_at1/112+14149302..14151875retrotransposon protein, putative, unclassified
LOC_Os02g24430OsAffx.12171.2.S1_at10/112+14156485..14160434SEC14 cytosolic factor, putative, expressed
LOC_Os02g24440NANA2+14160900..14162419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24450OsAffx.24405.1.S1_at11/112+14163255..14163586hypothetical protein
LOC_Os02g24460Os.23706.1.A1_x_at1/112+14167411..14168289retrotransposon protein, putative, unclassified, expressed
LOC_Os02g24470NANA2+14170245..14170718hypothetical protein
LOC_Os02g24480Os.40360.1.S1_x_at1/112+14172703..14175148hypothetical protein
LOC_Os02g24490NANA2+14182657..14184043hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24405.1.S1_at--651--1514Chr11:12226123..12226144 (22 bp)
ACTAAAAAAAGGCACCATGGATGGC
NONE
OsAffx.24405.1.S1_at--378--2691Chr02:14163372..14163396 (25 bp)
AAGCTCACCAAATGGTGGGAAACAA
LOC_Os02g24450
OsAffx.24405.1.S1_at--283--8153Chr11:12226166..12226190 (25 bp)
GGAAACAAAGTCATGTTGCTGCTGC
NONE
OsAffx.24405.1.S1_at--807--4776Chr11:12226183..12226207 (25 bp)
GCTGCTGCAACCATGCAGGCTGAAA
NONE
OsAffx.24405.1.S1_at--595--26313Chr11:12226191..12226215 (25 bp)
AACCATGCAGGCTGAAACCACCACT
NONE
OsAffx.24405.1.S1_at--179--2014Chr11:12226213..12226237 (25 bp)
ACTCTCTTCTCCTATTTCGATCTCT
NONE
OsAffx.24405.1.S1_at--631--3652Chr11:12226218..12226242 (25 bp)
CTTCTCCTATTTCGATCTCTCTCAA
NONE
OsAffx.24405.1.S1_at--300--9252Chr11:12226222..12226246 (25 bp)
TCCTATTTCGATCTCTCTCAACTCT
NONE
OsAffx.24405.1.S1_at--264--102111Chr11:12226225..12226249 (25 bp)
TATTTCGATCTCTCTCAACTCTCCA
NONE
OsAffx.24405.1.S1_at--306--10313Chr11:12226227..12226251 (25 bp)
TTTCGATCTCTCTCAACTCTCCATG
NONE
OsAffx.24405.1.S1_at--1115--95113Chr11:12226233..12226257 (25 bp)
TCTCTCTCAACTCTCCATGCATGTG
NONE
Target Sequence 
ACTAAAAAAAGGCACCATGGATGGCATGGAAGCTCACCAAATGGTGGGAAACAAAGTCATGTTGCTGCTGCAACCATGCA
GGCTGAAACCACCACTCTCTTCTCCTATTTCGATCTCTCTCAACTCTCCATGCATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis