Browse Element(s) Details


OsAffx.12171.2.S1_at

Description tigr:9630.m02277
TID=OsAffx.12171.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AC006841 putative phosphatidylinositol phophatidylcholine transfer protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2443010/11SEC14 cytosolic factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g24370OsAffx.12169.1.S1_at11/112+14132525..14134066hypothetical protein
LOC_Os02g24370OsAffx.12169.1.S1_x_at10/112+14132525..14134066hypothetical protein
LOC_Os02g24370Os.27455.1.S1_x_at1/112+14132525..14134066hypothetical protein
LOC_Os02g24370OsAffx.11259.1.S1_at1/112+14132525..14134066hypothetical protein
LOC_Os02g24370OsAffx.19363.1.S1_at1/112+14132525..14134066hypothetical protein
LOC_Os02g24370Os.27455.1.S1_at1/112+14132525..14134066hypothetical protein
LOC_Os02g24380OsAffx.2727.1.S1_at8/112+14138340..14139351hypothetical protein
LOC_Os02g24390OsAffx.2728.1.S1_at11/112+14140046..14140988hypothetical protein
LOC_Os02g24390OsAffx.31091.1.S1_x_at1/112+14140046..14140988hypothetical protein
LOC_Os02g24400OsAffx.12170.1.S1_at11/112+14143743..14145052hypothetical protein
LOC_Os02g24400OsAffx.22442.1.S1_x_at1/112+14143743..14145052hypothetical protein
LOC_Os02g24410OsAffx.31083.3.S1_s_at11/112+14146692..14147775hypothetical protein
LOC_Os02g24420OsAffx.19776.1.S1_at1/112+14149302..14151875retrotransposon protein, putative, unclassified
LOC_Os02g24430OsAffx.12171.2.S1_at10/112+14156485..14160434SEC14 cytosolic factor, putative, expressed
LOC_Os02g24440NANA2+14160900..14162419retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g24450OsAffx.24405.1.S1_at11/112+14163255..14163586hypothetical protein
LOC_Os02g24460Os.23706.1.A1_x_at1/112+14167411..14168289retrotransposon protein, putative, unclassified, expressed
LOC_Os02g24470NANA2+14170245..14170718hypothetical protein
LOC_Os02g24480Os.40360.1.S1_x_at1/112+14172703..14175148hypothetical protein
LOC_Os02g24490NANA2+14182657..14184043hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006656biological_processphosphatidylcholine biosynthesis
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
GO:0008526molecular_functionphosphatidylinositol transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12171.2.S1_at--769--651NONE
ATGCACACCAAGACCCTAGGATCAG
NONE
OsAffx.12171.2.S1_at--438--5811Chr02:14159202..14159226 (25 bp)
GACCCTAGGATCAGCTTATTCTTGT
LOC_Os02g24430
OsAffx.12171.2.S1_at--863--9191Chr02:14159256..14159280 (25 bp)
TGCCATTTGCCAGAGCAAGGGATTG
LOC_Os02g24430
OsAffx.12171.2.S1_at--625--10691Chr02:14159262..14159286 (25 bp)
TTGCCAGAGCAAGGGATTGCCAGAT
LOC_Os02g24430
OsAffx.12171.2.S1_at--488--6591Chr02:14159276..14159300 (25 bp)
GATTGCCAGATGAGAATGTCACAGT
LOC_Os02g24430
OsAffx.12171.2.S1_at--1162--5271Chr02:14159289..14159408 (25 bp)
GAATGTCACAGTAACCAAAGCGATT
LOC_Os02g24430
OsAffx.12171.2.S1_at--882--9771Chr02:14159420..14159444 (25 bp)
TAATGGATCCAATCCTCCACTCTAT
LOC_Os02g24430
OsAffx.12171.2.S1_at--348--5131Chr02:14159559..14159583 (25 bp)
GCACAACAACTATCCGAGATATCAG
LOC_Os02g24430
OsAffx.12171.2.S1_at--953--2031Chr02:14159567..14159591 (25 bp)
ACTATCCGAGATATCAGTGGAGGCT
LOC_Os02g24430
OsAffx.12171.2.S1_at--454--5231Chr02:14159604..14159628 (25 bp)
GAATATGTTTCTTCTACAAAGCGTT
LOC_Os02g24430
OsAffx.12171.2.S1_at--639--9431Chr02:14159616..14159640 (25 bp)
TCTACAAAGCGTTTGTCCGATATTG
LOC_Os02g24430
Target Sequence 
ATGCACACCAAGACCCTAGGATCAGCTTATTCTTGTGATGTTCCAATGGTAGAGAAGGCCATAGATGCCATTTGCCAGAG
CAAGGGATTGCCAGATGAGAATGTCACAGTAACCAAAGCGATTGTAAATGCCTCTAATGGATCCAATCCTCCACTCTATG
GGGGTATCATGGCTCTTGTCATGAGCATTGCAACAATGCTCCGTGTTAGCCGCAACATGCCAAAGAAGGTACTTGGTGCT
ACCCTTGGGGCACAAAGTACATCCAAAATCCAAGCACAACAACTATCCGAGATATCAGTGGAGGCTGTGTCAGTAGCTGA
ATATGTTTCTTCTACAAAGCGTTTGTCCGATATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12171.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis