Browse Element(s) Details


OsAffx.19363.1.S1_at

Description tigr:9639.m04099
TID=OsAffx.19363.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4422010/11hypothetical protein
LOC_Os02g243701/11hypothetical protein
LOC_Os04g036301/11retrotransposon protein, putative, unclassified
LOC_Os09g051201/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44190Os.45957.4.S1_x_at5/1111+26182739..26187542retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g44190Os.45957.3.S1_x_at2/1111+26182739..26187542retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g44200NANA11+26190180..26191301hypothetical protein
LOC_Os11g44210Os.35344.3.S1_x_at8/1111+26192236..26198446transposon protein, putative, Mutator sub-class
LOC_Os11g44210Os.35344.18.S1_x_at7/1111+26192236..26198446transposon protein, putative, Mutator sub-class
LOC_Os11g44210OsAffx.22940.5.S1_x_at2/1111+26192236..26198446transposon protein, putative, Mutator sub-class
LOC_Os11g44220OsAffx.19363.1.S1_at10/1111+26208336..26209893hypothetical protein
LOC_Os11g44230OsAffx.19364.1.S1_at11/1111+26217111..26219293hypothetical protein
LOC_Os11g44240Os.35344.3.S1_x_at8/1111+26223254..26232971Transposable element protein, putative, MuDR
LOC_Os11g44240Os.35344.18.S1_x_at5/1111+26223254..26232971Transposable element protein, putative, MuDR
LOC_Os11g44240OsAffx.22940.5.S1_at4/1111+26223254..26232971Transposable element protein, putative, MuDR
LOC_Os11g44240OsAffx.22940.5.S1_x_at3/1111+26223254..26232971Transposable element protein, putative, MuDR

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19363.1.S1_at--244--103521Chr12:5533561..5533582 (22 bp)
TTTATTCATGATTGCCGATCGATGC
NONE
OsAffx.19363.1.S1_at--486--33510Chr08:15775205..15775229 (25 bp)
CACGCTCATACACCCGAAGGCGAGT
NONE
OsAffx.19363.1.S1_at--1007--4491Chr11:26209551..26209575 (25 bp)
GCCGTGTTCGATTTCCACATCAACA
LOC_Os11g44220
OsAffx.19363.1.S1_at--206--2171Chr11:26209529..26209553 (25 bp)
ACACCCATGCGCTTCTATCAAGAGA
LOC_Os11g44220
OsAffx.19363.1.S1_at--1046--2771Chr11:26209224..26209534 (25 bp)
AAGAGAAGTCTTCGTCTGCCCTAGG
LOC_Os11g44220
OsAffx.19363.1.S1_at--387--3711Chr11:26209204..26209228 (25 bp)
CTAGGTCTACGTCTATTCTCGATTT
LOC_Os11g44220
OsAffx.19363.1.S1_at--141--10591Chr11:26209189..26209213 (25 bp)
TTCTCGATTTAGTAAGCCAGGTCTT
LOC_Os11g44220
OsAffx.19363.1.S1_at--1147--4351NONE
CCACTGCCAGCGACAGTCATGAATG
NONE
OsAffx.19363.1.S1_at--436--10432Chr12:8850475..8850494 (20 bp)
TTATCGCTTGGGATGTGTTCTCTGT
NONE
OsAffx.19363.1.S1_at--387--7419Chr08:17546208..17546227 (20 bp)
GTGTTGGTGATTCCCCGCGTTTTGC
NONE
OsAffx.19363.1.S1_at--985--4212Chr12:748178..748201 (24 bp)
CCGCGTTTTGCTGCGGGAATTACTA
NONE
Target Sequence 
TTTATTCATGATTGCCGATCGATGCATATATGACATCGGCTCAAAGGATCAAATCAACTGGCACGCTCATACACCCGAAG
GCGAGTTTTGGACCTGCACTGGAGTTAAGCAAATCTCCCAGGCCGCCGTGTTCGATTTCCACATCAACACCCATGCGCTT
CTATCAAGAGAAGTCTTCGTCTGCCCTAGGTCTACGTCTATTCTCGATTTAGTAAGCCAGGTCTTAATTGGGGCCACTGC
CAGCGACAGTCATGAATGGATGATGGCGTGGTTGTTGATGATGAATGAGTTCTTGGATGTGGTGCTCGGGATGCTTAAGG
GATGTTATCGCTTGGGATGTGTTCTCTGTGTTGATGCTTTGGGGATGTTGACGTGGGTGTTGGTGATTCCCCGCGTTTTG
CTGCGGGAATTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19363.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis