Browse Element(s) Details


OsAffx.2441.1.S1_at

Description tigr:9629.m06883
TID=OsAffx.2441.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6926011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69210OsAffx.23981.1.S1_at11/111+40547968..40556378Mannosyl oligosaccharide glucosidase family protein, expressed
LOC_Os01g69220Os.50010.1.S1_at11/111+40557066..40560061exostosin family protein, putative, expressed
LOC_Os01g69230Os.8161.1.S1_at11/111+40562037..40565292exocyst subunit EXO70 family protein, putative, expressed
LOC_Os01g69240Os.54524.1.S1_at11/111+40565538..40567303SNF1-related protein kinase regulatory gamma subunit 1, putative, expressed
LOC_Os01g69250Os.12984.1.S1_at11/111+40567656..40571578Mitochondrial import receptor subunit TOM20, putative, expressed
LOC_Os01g69250OsAffx.23982.1.S1_at9/111+40567656..40571578Mitochondrial import receptor subunit TOM20, putative, expressed
LOC_Os01g69260OsAffx.2441.1.S1_at11/111+40579452..40582265hypothetical protein
LOC_Os01g69270NANA1+40583655..40585321MYND finger family protein, expressed
LOC_Os01g69280NANA1+40601492..40604011Exo70 exocyst complex subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2441.1.S1_at--905--2111Chr01:40582121..40582145 (25 bp)
ACATGGTCCCATGCTGAATTCAGAG
LOC_Os01g69260
OsAffx.2441.1.S1_at--672--2431Chr01:40581974..40581998 (25 bp)
AAAAGTTGGTGATGTCCCTGCATGG
LOC_Os01g69260
OsAffx.2441.1.S1_at--513--8151Chr01:40581949..40581973 (25 bp)
GGCAAACCCTTGAAATTTCCAACTG
LOC_Os01g69260
OsAffx.2441.1.S1_at--938--5331Chr01:40581532..40581943 (25 bp)
GAAGCTGAGACTGACCGGGTTTCTA
LOC_Os01g69260
OsAffx.2441.1.S1_at--1117--7671Chr01:40581516..40581540 (25 bp)
GGGTTTCTACGAGGGAATCTTCAGA
LOC_Os01g69260
OsAffx.2441.1.S1_at--106--5891Chr01:40581485..40581509 (25 bp)
GAGCGCATCTGCGTATGTGTATTTG
LOC_Os01g69260
OsAffx.2441.1.S1_at--321--2971Chr01:40581459..40581483 (25 bp)
AATGGTTGGGCCGTACAGCAGCTAC
LOC_Os01g69260
OsAffx.2441.1.S1_at--840--6651Chr01:40580539..40580563 (25 bp)
GTTGCAGGCAAAAGCTCGCGTCCGC
LOC_Os01g69260
OsAffx.2441.1.S1_at--724--8331Chr01:40580503..40580527 (25 bp)
GGCTGACTGTTTTTGTGCTGATCAA
LOC_Os01g69260
OsAffx.2441.1.S1_at--548--2571Chr01:40580480..40580504 (25 bp)
AACGATGCTAAAGCCCGGGAATCCA
LOC_Os01g69260
OsAffx.2441.1.S1_at--147--8211Chr01:40580463..40580487 (25 bp)
GGAATCCAATCCAGACGGCGGTGTC
LOC_Os01g69260
Target Sequence 
ACATGGTCCCATGCTGAATTCAGAGCTGCATTATTCACAGGAAAAAAACAAAAGAAAAGTTGGTGATGTCCCTGCATGGG
GCAAACCCTTGAAATTTCCAACTGGGGCAGAAGCTGAGACTGACCGGGTTTCTACGAGGGAATCTTCAGAGAAATGGAGC
GCATCTGCGTATGTGTATTTGCAATGGTTGGGCCGTACAGCAGCTACGGTTTGTTGCAGGCAAAAGCTCGCGTCCGCAGC
GTGTGCGTGGCTGACTGTTTTTGTGCTGATCAACGATGCTAAAGCCCGGGAATCCAATCCAGACGGCGGTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2441.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis