Browse Element(s) Details


OsAffx.24442.1.S1_at

Description tigr:9630.m02542
TID=OsAffx.24442.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F21M12.7 gene product
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2689011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26850Os.13799.1.S1_at11/112+15756235..15759910conserved eukaryotic protein; DUF652; involved in RNA processing and modification, putative, expressed
LOC_Os02g26860Os.13474.1.S1_at11/112+15764571..15769479membrane related protein, putative, expressed
LOC_Os02g26870NANA2+15774586..15777808retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26880NANA2+15778673..15780610retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26890OsAffx.24442.1.S1_at11/112+15782604..15784124pentatricopeptide, putative
LOC_Os02g26900OsAffx.12214.1.S1_at11/112+15790833..15791363hypothetical protein
LOC_Os02g26910NANA2+15793602..15794198hypothetical protein
LOC_Os02g26920NANA2+15805055..15811017retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24442.1.S1_at--622--7891Chr02:15783596..15783620 (25 bp)
GGTTCAGCCGGATGCTGTCAGCTAT
LOC_Os02g26890
OsAffx.24442.1.S1_at--544--311Chr02:15783619..15783643 (25 bp)
ATACCTCACTTGTTGGATGCCTTTG
LOC_Os02g26890
OsAffx.24442.1.S1_at--553--7091Chr02:15783717..15783741 (25 bp)
GTCACATACAATCTGCTGCTTGAGG
LOC_Os02g26890
OsAffx.24442.1.S1_at--188--3631Chr02:15783779..15783803 (25 bp)
CTTGCTTGAGAAGTTACCGTCCGAA
LOC_Os02g26890
OsAffx.24442.1.S1_at--1101--4751Chr02:15783812..15783836 (25 bp)
GCTGAATGTCGCAAGCTACCGGATT
LOC_Os02g26890
OsAffx.24442.1.S1_at--1134--10811Chr02:15783835..15783859 (25 bp)
TTGTGATGAATTGCCTGTGCTCATG
LOC_Os02g26890
OsAffx.24442.1.S1_at--284--3631Chr02:15783884..15783908 (25 bp)
CTTGCTGGGCATGATGCTCGGACGA
LOC_Os02g26890
OsAffx.24442.1.S1_at--51--10811Chr02:15783913..15783937 (25 bp)
TTGTACCTCACTATGCAGCATCAAA
LOC_Os02g26890
OsAffx.24442.1.S1_at--605--3531Chr02:15783938..15783962 (25 bp)
CATGCTGTTGATTGGTCTGTGTGAT
LOC_Os02g26890
OsAffx.24442.1.S1_at--808--1951Chr02:15784001..15784025 (25 bp)
ACTGGTGGACACTGGGTTCATGCCA
LOC_Os02g26890
OsAffx.24442.1.S1_at--163--2951Chr02:15784043..15784067 (25 bp)
AAGGCTGATTGAGTCTGTGTTCCGG
LOC_Os02g26890
Target Sequence 
GGTTCAGCCGGATGCTGTCAGCTATACCTCACTTGTTGGATGCCTTTGTCGGCATGGGAATGTGGATGAGGGGATCAATC
TTGTGCAGGAGATGTGGCAGAAAGGGTGTAAGGCTGATGTTGTCACATACAATCTGCTGCTTGAGGGGTTGTGCAAAGAT
AGACGGATAGCGGAAGCAGTGACCTTGCTTGAGAAGTTACCGTCCGAAGGAGTACAGCTGAATGTCGCAAGCTACCGGAT
TGTGATGAATTGCCTGTGCTCATGTGGAGAGATGGAGAAAGCGGCTGGCTTGCTGGGCATGATGCTCGGACGAGGATTTG
TACCTCACTATGCAGCATCAAACATGCTGTTGATTGGTCTGTGTGATGTTGGGAGGGTATCAGATGCAACAGTCACATTG
TATGGACTGGTGGACACTGGGTTCATGCCAGAGGCTAGATGCTGGGCAAGGCTGATTGAGTCTGTGTTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis