Browse Element(s) Details


OsAffx.24477.2.S1_at

Description tigr:9632.m01866
TID=OsAffx.24477.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2041010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g20360Os.27435.1.S1_x_at5/114+11370808..11372988hypothetical protein
LOC_Os04g20360Os.46334.1.S1_x_at4/114+11370808..11372988hypothetical protein
LOC_Os04g20370NANA4+11374236..11375429transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20380NANA4+11377926..11378212hypothetical protein
LOC_Os04g20390OsAffx.22421.1.S1_at4/114+11378755..11382002transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20390OsAffx.22421.4.S1_x_at2/114+11378755..11382002transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20390Os.26886.3.S1_x_at1/114+11378755..11382002transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20390OsAffx.22421.2.S1_at1/114+11378755..11382002transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20400Os.52956.1.S1_at2/114+11384256..11385551Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os04g20410OsAffx.24477.2.S1_at10/114+11391620..11394147hypothetical protein
LOC_Os04g20420Os.50497.1.S1_at11/114+11396708..11398304expressed protein
LOC_Os04g20420OsAffx.26590.1.S1_at1/114+11396708..11398304expressed protein
LOC_Os04g20430OsAffx.13887.1.S1_at11/114+11408189..11408998hypothetical protein
LOC_Os04g20440NANA4+11411611..11414915transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20450NANA4+11416311..11418641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20460Os.47463.1.S1_x_at6/114+11419103..11421275transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g20460Os.14491.2.S1_x_at4/114+11419103..11421275transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24477.2.S1_at--495--4311NONE
CCTTATCTGACAGGGTGTTACAGTT
NONE
OsAffx.24477.2.S1_at--953--5611Chr04:11393904..11393925 (22 bp)
GACAGGGTGTTACAGTTTCCCTCTC
LOC_Os04g20410
OsAffx.24477.2.S1_at--77--9871Chr04:11393911..11393935 (25 bp)
TACAGTTTCCCTCTCCGACTCGGAT
LOC_Os04g20410
OsAffx.24477.2.S1_at--520--4551Chr04:11393953..11393977 (25 bp)
GCCCAAGATAAGGACTACACGCCGA
LOC_Os04g20410
OsAffx.24477.2.S1_at--1040--6451Chr04:11393959..11393983 (25 bp)
GATAAGGACTACACGCCGATCCAAG
LOC_Os04g20410
OsAffx.24477.2.S1_at--740--1811Chr04:11393971..11393995 (25 bp)
ACGCCGATCCAAGAAATTTTTATGG
LOC_Os04g20410
OsAffx.24477.2.S1_at--491--3131Chr04:11393985..11394009 (25 bp)
AATTTTTATGGCCTCAAGAGCTGAG
LOC_Os04g20410
OsAffx.24477.2.S1_at--291--5411Chr04:11394016..11394040 (25 bp)
GAAGCTCGCCGATTAAGGGAGCAGT
LOC_Os04g20410
OsAffx.24477.2.S1_at--202--5451Chr04:11394043..11394067 (25 bp)
GAACGTGAGGACAAACGCCTTTGCA
LOC_Os04g20410
OsAffx.24477.2.S1_at--692--651Chr04:11394080..11394104 (25 bp)
ATGAAGAACGGCAGGGCCTGCAATC
LOC_Os04g20410
OsAffx.24477.2.S1_at--829--7551Chr04:11394093..11394117 (25 bp)
GGGCCTGCAATCAGGATCCGTGCAC
LOC_Os04g20410
Target Sequence 
CCTTATCTGACAGGGTGTTACAGTTTCCCTCTCCGACTCGGATCCGAACTTGCTGGGGAGGCCCAAGATAAGGACTACAC
GCCGATCCAAGAAATTTTTATGGCCTCAAGAGCTGAGGATGAGGAAGCTCGCCGATTAAGGGAGCAGTGGGAACGTGAGG
ACAAACGCCTTTGCAAGGGGGCAGAAGATGAAGAACGGCAGGGCCTGCAATCAGGATCCGTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24477.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis