Browse Element(s) Details


OsAffx.24550.1.S1_at

Description tigr:9630.m03134
TID=OsAffx.24550.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SOUL heme-binding protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3302010/11SOUL heme-binding protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32990NANA2+19608212..19609204expressed protein
LOC_Os02g33000Os.53440.1.S1_at10/112+19613375..19617976Glycosyl hydrolases family 17 protein, expressed
LOC_Os02g33010Os.7691.1.S1_s_at11/112+19617191..19622802expressed protein
LOC_Os02g33020OsAffx.24550.1.S1_at10/112+19626566..19629199SOUL heme-binding protein, expressed
LOC_Os02g33020Os.57395.1.S1_at1/112+19626566..19629199SOUL heme-binding protein, expressed
LOC_Os02g33030Os.39131.1.A1_at11/112+19630403..19632981Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os02g33030OsAffx.12324.1.S1_at11/112+19630403..19632981Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os02g33040OsAffx.12325.1.S1_at11/112+19636332..19636992hypothetical protein
LOC_Os02g33050NANA2+19637781..19638326hypothetical protein
LOC_Os02g33060Os.9930.1.S1_at11/112+19639144..19640211expressed protein
LOC_Os02g33060OsAffx.12326.1.S1_at11/112+19639144..19640211expressed protein
LOC_Os02g33070Os.9283.1.S1_at2/112+19643061..19643496hypothetical protein
LOC_Os02g33080Os.4756.1.S1_at11/112+19644045..19647588hydrolase, carbon-nitrogen family protein, expressed
LOC_Os02g33090OsAffx.2837.1.S1_at11/112+19648050..19648574expressed protein
LOC_Os02g33090OsAffx.2837.1.S1_x_at11/112+19648050..19648574expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24550.1.S1_at--868--2871Chr02:19627000..19627158 (25 bp)
AAGTGGAGTCCTACTATGTCGCTGA
LOC_Os02g33020
OsAffx.24550.1.S1_at--915--9331Chr02:19627152..19627176 (25 bp)
TCGCTGAGACGACAATGCCTGGAAG
LOC_Os02g33020
OsAffx.24550.1.S1_at--66--1171Chr02:19627206..19627230 (25 bp)
AGTCATTCAACGTGCTGGCGTCTTA
LOC_Os02g33020
OsAffx.24550.1.S1_at--221--7311Chr02:19627217..19627241 (25 bp)
GTGCTGGCGTCTTACTTATTTGGTA
LOC_Os02g33020
OsAffx.24550.1.S1_at--765--2431Chr02:19627647..19627671 (25 bp)
AAAATATGGTCCAGACCTGCCACTG
LOC_Os02g33020
OsAffx.24550.1.S1_at--420--2431Chr02:19627674..19627698 (25 bp)
AAAAGACCCTTCTGTGACCATCAAG
LOC_Os02g33020
OsAffx.24550.1.S1_at--1050--8011Chr02:19627698..19627722 (25 bp)
GGAGGTGCCCGCCAAAATCGTAGCA
LOC_Os02g33020
OsAffx.24550.1.S1_at--595--3051Chr02:19627713..19627737 (25 bp)
AATCGTAGCAGTTGCAGCCTTTTCA
LOC_Os02g33020
OsAffx.24550.1.S1_at--1140--3371NONE
CAGCCTTTTCAGGTCTGGTTACAGA
NONE
OsAffx.24550.1.S1_at--332--2931Chr02:19628975..19628999 (25 bp)
AAGGACTCTCAATTTCGGGTGAAAG
LOC_Os02g33020
OsAffx.24550.1.S1_at--1149--9691Chr02:19629132..19629156 (25 bp)
TCACACTTCCATTCACAAGGCGTAA
LOC_Os02g33020
Target Sequence 
AAGTGGAGTCCTACTATGTCGCTGAGACGACAATGCCTGGAAGAAGCGGATTCGATTTCAATGGATCATCCCAGTCATTC
AACGTGCTGGCGTCTTACTTATTTGGTAAGAACACGACTTCTGAGCAAATGGAAATGACAACCCCTGTTTTTACTCGGAA
GGGTGAACCCGATGGTGAAAAGATGGACATGACCACACCAGTTATAACAAAGAAGTCAGCTAATGAAAACAAGTGGAAGA
TGTCCTTTGTGATGCCATCAAAATATGGTCCAGACCTGCCACTGCCAAAAGACCCTTCTGTGACCATCAAGGAGGTGCCC
GCCAAAATCGTAGCAGTTGCAGCCTTTTCAGGTCTGGTTACAGATGATGACATAAGCCAGAGGGAATCCAGATTGCGGGA
AACTCTCCAAAAGGACTCTCAATTTCGGGTGAAAGATGATTCAGTGGTAGAAATTGCTCAGTATAATCCCCCTTTCACAC
TTCCATTCACAAGGCGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis