Browse Element(s) Details


OsAffx.24606.2.S1_at

Description tigr:9632.m03658
TID=OsAffx.24606.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Myb-like DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3874011/11Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g282802/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38730OsAffx.14194.1.S1_at10/114+22782431..22784478hypothetical protein
LOC_Os04g38740OsAffx.24606.2.S1_at11/114+22804958..22807307Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g38740OsAffx.24606.2.S1_x_at11/114+22804958..22807307Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g38750Os.7714.1.S1_at11/114+22808289..22810012Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed
LOC_Os04g38760OsAffx.14195.1.S1_at11/114+22812991..22814888hypothetical protein
LOC_Os04g38770OsAffx.26379.1.S1_at11/114+22821096..22822421Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os04g38780NANA4+22826590..22829209K-box region family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24606.2.S1_at--368--4691Chr04:22806780..22806804 (25 bp)
GCGGAGGCGCGCTTGGCTCGGGAGG
LOC_Os04g38740
OsAffx.24606.2.S1_at--1081--5752Chr04:22806911..22806935 (25 bp)
GACGTCCACGCTGAGCTTCTCGGAG
LOC_Os04g38740
OsAffx.24606.2.S1_at--516--7272Chr04:22806914..22806938 (25 bp)
GTCCACGCTGAGCTTCTCGGAGAGC
LOC_Os04g38740
OsAffx.24606.2.S1_at--700--7611Chr04:22807149..22807173 (25 bp)
GGGAGAGACGCGGAAGCCGACGGCG
LOC_Os04g38740
OsAffx.24606.2.S1_at--1053--4611Chr04:22807171..22807195 (25 bp)
GCGAGTTCCAGGAGACCGAGGAGGA
LOC_Os04g38740
OsAffx.24606.2.S1_at--15--3411Chr04:22807211..22807235 (25 bp)
CAGCATACTGAACCTGGTGAACTCC
LOC_Os04g38740
OsAffx.24606.2.S1_at--162--4871Chr04:22807213..22807237 (25 bp)
GCATACTGAACCTGGTGAACTCCTC
LOC_Os04g38740
OsAffx.24606.2.S1_at--67--331Chr04:22807215..22807239 (25 bp)
ATACTGAACCTGGTGAACTCCTCGT
LOC_Os04g38740
OsAffx.24606.2.S1_at--1009--9251Chr04:22807233..22807257 (25 bp)
TCCTCGTCGGCACCTATGTCGACGG
LOC_Os04g38740
OsAffx.24606.2.S1_at--505--7191Chr04:22807238..22807262 (25 bp)
GTCGGCACCTATGTCGACGGCCGTG
LOC_Os04g38740
OsAffx.24606.2.S1_at--94--9451Chr04:22807239..22807263 (25 bp)
TCGGCACCTATGTCGACGGCCGTGG
LOC_Os04g38740
Target Sequence 
GCGGAGGCGCGCTTGGCTCGGGAGGCCAAGCTGCGCGCGCTCGCGGCCTCCGCGACCCCGGGCGCGCCGCACCTCCCGGC
ACCCCCCGCGTCGGCGGCGGCGGCGGCGGCGGCTCACGGCCTCGACTCGCCGACGTCCACGCTGAGCTTCTCGGAGAGCG
CGGTGCTCGCCACCGTGCTGGAGGCGCACGGCGCCGCCGCCGCGGCGGCCGCGCGCGCCGCCATGCAGCCCATGCAGGCG
TACGACGAGGCGTGCAAGGACCAGCACTGGGGCGACGTCGACGCCGCCGACGTGGGCTTCCCCGGCGCCGGAGCGGGGTT
CACGGGCCTACTCCTCGAAGGCTCCTTGAACCAGATCCCGAGGCCGGCGGGGAGAGACGCGGAAGCCGACGGCGAGTTCC
AGGAGACCGAGGAGGAGAAGAACTACTGGAACAGCATACTGAACCTGGTGAACTCCTCGTCGGCACCTATGTCGACGGCC
GTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24606.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis