Browse Element(s) Details


OsAffx.24637.5.S1_x_at

Description tigr:9630.m03724
TID=OsAffx.24637.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein phosphatase 2C, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g387805/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38730OsAffx.12397.1.S1_at11/112+23402441..23403366hypothetical protein
LOC_Os02g38730Os.22646.1.S1_x_at1/112+23402441..23403366hypothetical protein
LOC_Os02g38740Os.57171.1.S1_at11/112+23410133..23410909expressed protein
LOC_Os02g38750Os.9122.1.S1_at5/112+23411730..23413216hypothetical protein
LOC_Os02g38760NANA2+23415018..23418833hypothetical protein
LOC_Os02g38770NANA2+23420777..23421778hypothetical protein
LOC_Os02g38780OsAffx.24637.5.S1_x_at5/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38780Os.18261.1.S1_at4/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38780Os.5051.1.S1_x_at2/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38780Os.13531.1.S1_x_at1/112+23426755..23436505Protein phosphatase 2C containing protein, expressed
LOC_Os02g38790OsAffx.31174.5.S1_x_at7/112+23438197..23442968expressed protein
LOC_Os02g38790OsAffx.31174.4.S1_x_at4/112+23438197..23442968expressed protein
LOC_Os02g38790Os.29932.2.S1_x_at1/112+23438197..23442968expressed protein
LOC_Os02g38800Os.13531.1.S1_x_at11/112+23445846..2344882726S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os02g38810Os.18441.1.S1_at11/112+23455595..2345997726S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os02g38820Os.14404.1.S1_at11/112+23460100..23462169expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009738biological_processabscisic acid mediated signaling
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24637.5.S1_x_at--304--7412Chr02:23453275..23453299 (25 bp)
GTGATAGCAACTGAAGGCCTCTGGT
NONE
OsAffx.24637.5.S1_x_at--1069--5272Chr02:23453287..23453465 (25 bp)
GAAGGCCTCTGGTGCAACATGACAA
NONE
OsAffx.24637.5.S1_x_at--166--6652Chr02:23453477..23453501 (25 bp)
GTTGATCACACACATGACCGTCTTT
NONE
OsAffx.24637.5.S1_x_at--65--5932Chr02:23453905..23453929 (25 bp)
GAGCTTGTTCAGTTTGGCTTGCCAT
NONE
OsAffx.24637.5.S1_x_at--350--51Chr02:23454025..23454049 (25 bp)
ATTGACGATGATGTCGACCCCACCG
NONE
OsAffx.24637.5.S1_x_at--463--3032Chr02:23454112..23454136 (25 bp)
AATGCCGGGTCTGACGACAGCAACA
NONE
OsAffx.24637.5.S1_x_at--792--9971Chr02:23454189..23454213 (25 bp)
TACCACTGCCGTGGCTGCTGACGAG
NONE
OsAffx.24637.5.S1_x_at--1012--1071Chr02:23454212..23454236 (25 bp)
AGGGCACTGGCAATCCTCCTCATGG
NONE
OsAffx.24637.5.S1_x_at--9--9631Chr02:23454231..23454255 (25 bp)
TCATGGCGCACTAGTTGACACCGAC
NONE
OsAffx.24637.5.S1_x_at--1144--6171Chr02:23454259..23454283 (25 bp)
GAGGACGGGCTGACCTACTCCCAGG
NONE
OsAffx.24637.5.S1_x_at--371--5831Chr02:23454270..23454294 (25 bp)
GACCTACTCCCAGGACATGGACTTA
NONE
Target Sequence 
GTGATAGCAACTGAAGGCCTCTGGTGCAACATGACAAATCAAAATGTGGTTGATCACACACATGACCGTCTTTTGGAGGG
TGCAGAAGCGCGTGTCATCTGCCCCGAGCTTGTTCAGTTTGGCTTGCCATCGGGCGACAACACGACCGTCATCCTGGTTC
TGTTCAAGCCCGGCGCCTTCCCTGCTGTTCCGCCGGTCGACACCGACACTGACACTGACAGCCACATTGACGATGATGTC
GACCCCACCGGCAGCAACAATGCCACCGCGTCCGACAACAACGACCCCGCCAACGAGGTTGATCCCACTGCCAATGCCGG
GTCTGACGACAGCAACACCGGCGACGAGGTCAAGGTCGACGCCACTGCCACTGCCGTCGGCAGCAGCAGTACCACTGCCG
TGGCTGCTGACGAGGGCACTGGCAATCCTCCTCATGGCGCACTAGTTGACACCGACGACGAGGACGGGCTGACCTACTCC
CAGGACATGGACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24637.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis