Browse Element(s) Details


OsAffx.24643.1.S1_s_at

Description tigr:9630.m03757
TID=OsAffx.24643.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=fasciated ear2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3910011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39070Os.11948.1.S1_at11/112+23591972..23595749Got1-like family protein, expressed
LOC_Os02g39070OsAffx.12403.1.S1_s_at11/112+23591972..23595749Got1-like family protein, expressed
LOC_Os02g39080Os.27442.1.A1_at6/112+23600664..23601421expressed protein
LOC_Os02g39090NANA2+23603431..23604774Protein kinase domain containing protein, expressed
LOC_Os02g39100OsAffx.24643.1.S1_s_at11/112+23606150..23608548Leucine Rich Repeat family protein, expressed
LOC_Os02g39110NANA2+23611877..23618032retrotransposon protein, putative, unclassified
LOC_Os02g39120Os.28943.1.S1_x_at1/112+23618665..23621930transposon protein, putative, unclassified
LOC_Os02g39130OsAffx.24242.2.S1_at8/112+23628750..23629819transposon protein, putative, Pong sub-class
LOC_Os02g39130Os.31929.11.S1_x_at1/112+23628750..23629819transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009653biological_processmorphogenesis
GO:0009909biological_processregulation of flower development
GO:0040008biological_processregulation of growth
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005057molecular_functionreceptor signaling protein activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24643.1.S1_s_at--858--8691Chr02:23606720..23606744 (25 bp)
TGTGCTCCCGCAAGGCAAGGAACTT
LOC_Os02g39100
OsAffx.24643.1.S1_s_at--685--8171Chr02:23606702..23606726 (25 bp)
GGAACTTTGTGTTTCGGCCTGGAAG
LOC_Os02g39100
OsAffx.24643.1.S1_s_at--271--2271Chr02:23606581..23606605 (25 bp)
AAATCAGTTGGCCTCCATTTTTAAT
LOC_Os02g39100
OsAffx.24643.1.S1_s_at--916--10311Chr02:23606562..23606586 (25 bp)
TTTAATATCACTGGCCACGGGAACT
LOC_Os02g39100
OsAffx.24643.1.S1_s_at--833--1911Chr02:23606546..23606570 (25 bp)
ACGGGAACTGTGTGATCTTGATCTA
LOC_Os02g39100
OsAffx.24643.1.S1_s_at--153--8931Chr02:23606513..23606537 (25 bp)
TGAGCCATGTCCAAGTGTTCTACTG
LOC_Os02g39100
OsAffx.24643.1.S1_s_at--517--5271Chr02:23606435..23606459 (25 bp)
GAATGCACACATCTGGTTGCTGTAA
LOC_Os02g39100
OsAffx.24643.1.S1_s_at--462--31Chr02:23606391..23606415 (25 bp)
ATTGGACTGCTTCTGCCTCAGATAA
LOC_Os02g39100
OsAffx.24643.1.S1_s_at--1037--6871Chr02:23606274..23606298 (25 bp)
GTATATATCCAGTTATCCGCTTTTA
LOC_Os02g39100
OsAffx.24643.1.S1_s_at--714--10591Chr02:23606206..23606230 (25 bp)
TTCTGTCCAGTTCATAAGTTCTCAT
LOC_Os02g39100
OsAffx.24643.1.S1_s_at--1065--1211Chr02:23606190..23606214 (25 bp)
AGTTCTCATGCTTGTAATCTTGTTC
LOC_Os02g39100
Target Sequence 
TGTGCTCCCGCAAGGCAAGGAACTTTGTGTTTCGGCCTGGAAGGATGGAATATTAACATCAAAGGAAGAATTAGGAGATC
ATGTTGTGCTGTAAATAAGATAAGTTTCAGTGACTCAAGTGTGCAGCTAATCTTGAGTAAAATCAGTTGGCCTCCATTTT
TAATATCACTGGCCACGGGAACTGTGTGATCTTGATCTAATAGCTAATGAGCCATGTCCAAGTGTTCTACTGTTGTTTTT
CTAGGGATGTGTAGACCCGGTTCTGTTGTGTTTGCATCGTTCACAGAATGCACACATCTGGTTGCTGTAATACTGTCATG
TTTCTGAGGATTGGACTGCTTCTGCCTCAGATAATTGGAGTATTGTCATCAAGGATGCAGTGATGCACACAGTTAGGTGG
TCTAATAGCCACAAAAGGGAGCATGTAGTTGTGAACAACTTGAGATGTATATATCCAGTTATCCGCTTTTAATTTTACCT
TGTTTGAGTGAAGTTCGAGTTATAAATTCTGAATTTCTGTCCAGTTCATAAGTTCTCATGCTTGTAATCTTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24643.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis