Browse Element(s) Details


OsAffx.24660.1.S1_x_at

Description tigr:9630.m03904
TID=OsAffx.24660.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161573 putative protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4041011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40360Os.40855.5.S1_x_at11/112+24434815..24441083retrotransposon protein, putative, unclassified
LOC_Os02g40360Os.40360.1.S1_at9/112+24434815..24441083retrotransposon protein, putative, unclassified
LOC_Os02g40360Os.40360.1.S1_x_at6/112+24434815..24441083retrotransposon protein, putative, unclassified
LOC_Os02g40370NANA2+24444311..24444550retrotransposon protein, putative, unclassified
LOC_Os02g40380NANA2+24444914..24445246retrotransposon protein, putative, unclassified
LOC_Os02g40390NANA2+24445884..24452039retrotransposon protein, putative, unclassified
LOC_Os02g40400OsAffx.2926.1.S1_at11/112+24456379..24461846expressed protein
LOC_Os02g40410OsAffx.24660.1.S1_x_at11/112+24465676..24471502expressed protein
LOC_Os02g40410Os.51371.1.S1_at11/112+24465676..24471502expressed protein
LOC_Os02g40420OsAffx.2927.1.S1_at11/112+24477121..24481565expressed protein
LOC_Os02g40430Os.47492.1.A1_s_at2/112+24483246..24495968HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24660.1.S1_x_at--753--1471Chr02:24466357..24466381 (25 bp)
AGAATCAGCATTACCTGGCACCCGA
LOC_Os02g40410
OsAffx.24660.1.S1_x_at--824--1151Chr02:24466328..24466352 (25 bp)
AGTCTTCTTTTCTCCCTGATGTAGA
LOC_Os02g40410
OsAffx.24660.1.S1_x_at--739--5251Chr02:24466296..24466320 (25 bp)
GAATCGGAATGCCATGTTCTTGTGC
LOC_Os02g40410
OsAffx.24660.1.S1_x_at--701--9151Chr02:24466240..24466264 (25 bp)
TGCGCAGTCGAGTATGCTTTTCACT
LOC_Os02g40410
OsAffx.24660.1.S1_x_at--1162--10371Chr02:24466223..24466247 (25 bp)
TTTTCACTGGCTGGCATTTACCTGA
LOC_Os02g40410
OsAffx.24660.1.S1_x_at--546--8711Chr02:24466197..24466221 (25 bp)
TGTCCTCTTGATCCGATTCTGTTCA
LOC_Os02g40410
OsAffx.24660.1.S1_x_at--325--2191Chr02:24466172..24466196 (25 bp)
ACAAAGTCTTGGAGCTTCGGGAGCA
LOC_Os02g40410
OsAffx.24660.1.S1_x_at--28--2311Chr02:24466136..24466160 (25 bp)
AAAGGCTTCTTTTCGATTGTGTCAA
LOC_Os02g40410
OsAffx.24660.1.S1_x_at--859--6031Chr02:24466098..24466122 (25 bp)
GAGATCGGCGAGAACACCTTGCTAA
LOC_Os02g40410
OsAffx.24660.1.S1_x_at--17--1751Chr02:24466083..24466107 (25 bp)
ACCTTGCTAAGTACATTCCCATGGA
LOC_Os02g40410
OsAffx.24660.1.S1_x_at--638--2751Chr02:24466045..24466069 (25 bp)
AAGAACATGGATGGACGCCTCCTCT
LOC_Os02g40410
Target Sequence 
AGAATCAGCATTACCTGGCACCCGAGGGCAGTCTTCTTTTCTCCCTGATGTAGATGACGATGAATCGGAATGCCATGTTC
TTGTGCAAAATATAATGTCGTCTGCTGGATTAGACGATGCGCAGTCGAGTATGCTTTTCACTGGCTGGCATTTACCTGAC
TGTCCTCTTGATCCGATTCTGTTCAACAAAGTCTTGGAGCTTCGGGAGCAAAGTTCATACCAAAGGCTTCTTTTCGATTG
TGTCAATGTTGCTCTTGTTGAGATCGGCGAGAACACCTTGCTAAGTACATTCCCATGGAGCAAAGCACACTCAAGAACAT
GGATGGACGCCTCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24660.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis