Browse Element(s) Details


OsAffx.24733.1.S1_s_at

Description tigr:9630.m04354
TID=OsAffx.24733.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Rapid ALkalinization Factor (RALF), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4494011/11Rapid ALkalinization Factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44900OsAffx.24732.1.S1_x_at11/112+27198671..27201866expressed protein
LOC_Os02g44900Os.24379.1.A1_at10/112+27198671..27201866expressed protein
LOC_Os02g44910Os.11855.1.S1_at8/112+27201920..27206769MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os02g44920OsAffx.2960.1.S1_x_at11/112+27209372..27211850Protein kinase APK1A, chloroplast precursor, putative
LOC_Os02g44930Os.7523.1.S1_at11/112+27219411..27221344HMG1/2, putative, expressed
LOC_Os02g44940OsAffx.24733.1.S1_s_at11/112+27222966..27223758Rapid ALkalinization Factor family protein, expressed
LOC_Os02g44950NANA2+27226755..27227288transposon protein, putative, unclassified
LOC_Os02g44960Os.43567.1.S1_x_at1/112+27228929..27229624retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g44970NANA2+27232788..27234851hypothetical protein
LOC_Os02g44980Os.2448.1.S2_at11/112+27238974..27241065Amino acid transport protein, putative, expressed
LOC_Os02g44980Os.20175.1.A1_x_at1/112+27238974..27241065Amino acid transport protein, putative, expressed
LOC_Os02g44990Os.26517.1.S1_at11/112+27242828..27245601F-box domain containing protein, expressed
LOC_Os02g44990Os.26517.1.S2_at11/112+27242828..27245601F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007267biological_processcell-cell signaling
GO:0048046cellular_componentapoplast
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24733.1.S1_s_at--849--2611Chr02:27223465..27223489 (25 bp)
AACCCGCTGTTCGAACTGGATTCAA
LOC_Os02g44940
OsAffx.24733.1.S1_s_at--899--4211Chr02:27223468..27223492 (25 bp)
CCGCTGTTCGAACTGGATTCAAAGT
LOC_Os02g44940
OsAffx.24733.1.S1_s_at--682--9491Chr02:27223507..27223531 (25 bp)
TCTCCGTCTACTCGCTAGTTCGTCT
LOC_Os02g44940
OsAffx.24733.1.S1_s_at--668--9911Chr02:27223515..27223539 (25 bp)
TACTCGCTAGTTCGTCTTCTTCATT
LOC_Os02g44940
OsAffx.24733.1.S1_s_at--492--4131Chr02:27223519..27223543 (25 bp)
CGCTAGTTCGTCTTCTTCATTTTTT
LOC_Os02g44940
OsAffx.24733.1.S1_s_at--332--7171Chr02:27223609..27223633 (25 bp)
GTCTGGATCGGTGCCCAGGAATCGA
LOC_Os02g44940
OsAffx.24733.1.S1_s_at--827--3971Chr02:27223617..27223641 (25 bp)
CGGTGCCCAGGAATCGAATCGAGTG
LOC_Os02g44940
OsAffx.24733.1.S1_s_at--871--9771Chr02:27223644..27223668 (25 bp)
TAAGATTTGTGTCACTCCAGTCCTG
LOC_Os02g44940
OsAffx.24733.1.S1_s_at--930--7091Chr02:27223654..27223678 (25 bp)
GTCACTCCAGTCCTGTATGTGGATT
LOC_Os02g44940
OsAffx.24733.1.S1_s_at--1155--4331Chr02:27223660..27223684 (25 bp)
CCAGTCCTGTATGTGGATTCTAATA
LOC_Os02g44940
OsAffx.24733.1.S1_s_at--104--6611Chr02:27223699..27223723 (25 bp)
GTTGTGTATAAACTGGTGGATAGAT
LOC_Os02g44940
Target Sequence 
AACCCGCTGTTCGAACTGGATTCAAAGTTCGTTCGTTGCTCCTCTCCGTCTACTCGCTAGTTCGTCTTCTTCATTTTTTT
CTCCCCTTCCTTACTCTTTTTTTTTCTCCGCCCTGTTTTAACCGTGAAAGAAGAAGCACAATTGGTCTGGATCGGTGCCC
AGGAATCGAATCGAGTGAATAAGATTTGTGTCACTCCAGTCCTGTATGTGGATTCTAATAATATTAATAATCAAGTTGTG
TATAAACTGGTGGATAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24733.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis