Browse Element(s) Details


OsAffx.24744.4.A1_at

Description tigr:9638.m01327
TID=OsAffx.24744.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1536011/11retrotransposon protein, putative, unclassified
LOC_Os04g014001/11retrotransposon protein, putative, unclassified
LOC_Os06g349201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g15330OsAffx.30424.1.S1_s_at11/1110+7795015..7796476hypothetical protein
LOC_Os10g15340OsAffx.32166.4.S1_at11/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15340Os.36736.1.S1_x_at1/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15340OsAffx.18435.1.S1_x_at1/1110+7800997..7804746retrotransposon protein, putative, unclassified, expressed
LOC_Os10g15360OsAffx.24744.4.A1_at11/1110+7819182..7819625retrotransposon protein, putative, unclassified
LOC_Os10g15370OsAffx.8327.1.S1_at10/1110+7823635..7823927expressed protein
LOC_Os10g15390Os.17285.2.S1_x_at10/1110+7824172..7834913expressed protein
LOC_Os10g15390Os.46706.1.S1_x_at10/1110+7824172..7834913expressed protein
LOC_Os10g16390NANA10+7839603..7843537retrotransposon protein, putative, unclassified
LOC_Os10g16400NANA10+7843889..7844794hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24744.4.A1_at--863--5991Chr10:7819213..7819237 (25 bp)
GAGAGCCGGTTTGCTGGTGCCGGCG
LOC_Os10g15360
OsAffx.24744.4.A1_at--36--8531Chr10:7819279..7819303 (25 bp)
TGGAGGATGTAATGTCCCGCCTTCC
LOC_Os10g15360
OsAffx.24744.4.A1_at--1136--8011Chr10:7819280..7819304 (25 bp)
GGAGGATGTAATGTCCCGCCTTCCC
LOC_Os10g15360
OsAffx.24744.4.A1_at--946--994Chr11:3080623..3080665 (25 bp)
AGGATGTAATGTCCCGCCTTCCCCT
NONE
OsAffx.24744.4.A1_at--198--37125Chr10:7819305..7819329 (25 bp)
CTAGGCCAGGCCCGCTTACATCTGA
LOC_Os10g15360
OsAffx.24744.4.A1_at--943--4371Chr10:7819363..7819387 (25 bp)
CCAACACATATCTTTTATGCACACT
LOC_Os10g15360
OsAffx.24744.4.A1_at--77--253Chr10:7819370..7819394 (25 bp)
ATATCTTTTATGCACACTTTGTCCT
LOC_Os10g15360
OsAffx.24744.4.A1_at--595--7792Chr10:7819424..7819448 (25 bp)
GGTCGGTCACTTATCCCAAATTGCT
LOC_Os10g15360
OsAffx.24744.4.A1_at--131--7172Chr10:7819425..7819449 (25 bp)
GTCGGTCACTTATCCCAAATTGCTC
LOC_Os10g15360
OsAffx.24744.4.A1_at--382--7831Chr10:7819428..7819452 (25 bp)
GGTCACTTATCCCAAATTGCTCCAG
LOC_Os10g15360
OsAffx.24744.4.A1_at--1030--96715Chr12:14278336..14278736 (25 bp)
TCACTTATCCCAAATTGCTCCAGGC
NONE
Target Sequence 
GAGAGCCGGTTTGCTGGTGCCGGCGGCAGCGGAGGAGGCGAGGCGCTGGTGCTGGAGCCCGCCAGATGGAGGATGTAATG
TCCCGCCTTCCCCTAGGCCAGGCCCGCTTACATCTGATAGCTTTCATAGGTCATAGACTGCCCTCACAGACCAACACATA
TCTTTTATGCACACTTTGTCCTCACTCGTGTGCACCCGGGAAGAATTTCCCGGTCGGTCACTTATCCCAAATTGCTCCAG
GC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24744.4.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis