Browse Element(s) Details


OsAffx.24820.1.S1_at

Description tigr:9630.m04993
TID=OsAffx.24820.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5093011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50910Os.49492.1.S1_at10/112+31114780..31118150chromosome-associated kinesin, putative, expressed
LOC_Os02g50919NANA2+31131901..31132058NA
LOC_Os02g50930OsAffx.24820.1.S1_at11/112+31135212..31136527Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g50940Os.4657.1.S1_at11/112+31139411..31140268F-box family protein, putative, expressed
LOC_Os02g50950OsAffx.3032.1.S1_at9/112+31144469..31145991hypothetical protein
LOC_Os02g50960Os.2230.1.S1_at11/112+31153034..31156129Auxin efflux carrier component 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24820.1.S1_at--739--10111Chr02:31135803..31135827 (25 bp)
TATGTCCCCGGATTGACCATAGAGA
LOC_Os02g50930
OsAffx.24820.1.S1_at--788--1351Chr02:31135823..31135847 (25 bp)
AGAGAGCCTGATGTTTGATTTTGAT
LOC_Os02g50930
OsAffx.24820.1.S1_at--291--5351Chr02:31135946..31135970 (25 bp)
GAAGAGAGTTTTTCCTGTAAGGCTT
LOC_Os02g50930
OsAffx.24820.1.S1_at--1026--4931Chr02:31136071..31136095 (25 bp)
GCTTGGATACGAGGAGGTGCTTCTC
LOC_Os02g50930
OsAffx.24820.1.S1_at--202--10591Chr02:31136091..31136115 (25 bp)
TTCTCCATGGGCACTTACCAATATG
LOC_Os02g50930
OsAffx.24820.1.S1_at--872--8291Chr02:31136123..31136147 (25 bp)
GGCTTCTGAACTTCGAGTGGCTCTC
LOC_Os02g50930
OsAffx.24820.1.S1_at--896--3771Chr02:31136143..31136167 (25 bp)
CTCTCCAGCCAGGTCGTAACAAAAA
LOC_Os02g50930
OsAffx.24820.1.S1_at--615--4851Chr02:31136196..31136220 (25 bp)
GCTACTGGCATAAGCTCTGTCAATG
LOC_Os02g50930
OsAffx.24820.1.S1_at--152--7751Chr02:31136262..31136286 (25 bp)
GGTGAGAGCTTCTCCATGTCGAAGA
LOC_Os02g50930
OsAffx.24820.1.S1_at--965--3231Chr02:31136312..31136336 (25 bp)
CAAGCTGCCAGCTGGTTCAGACAAT
LOC_Os02g50930
OsAffx.24820.1.S1_at--97--71Chr02:31136335..31136359 (25 bp)
ATTGCTCAGAAACGGCGAGTTTTCC
LOC_Os02g50930
Target Sequence 
TATGTCCCCGGATTGACCATAGAGAGCCTGATGTTTGATTTTGATGAGAGGTTGGAGGAGGGCCGGCTGTCGGAAGAATG
CGAGGATGGATTCCAATCTTCCAGACAGAAGAAGCCCATGGATGAGGAACAAACAGTAACTGAGAAGAGAGTTTTTCCTG
TAAGGCTTGGGAAGTTCAAGAATGTCGGGAACACTGGTGTGGGTGGTGTTGACAATGGCAATGCAGCTGGTATAGTGAGT
AGGGAACCAGGGGAGAGTAGCAGTAGCAGCTTGGATACGAGGAGGTGCTTCTCCATGGGCACTTACCAATATGTTCTTGG
GGCTTCTGAACTTCGAGTGGCTCTCCAGCCAGGTCGTAACAAAAATGGCGTGGGCAGCAGGTTGAAGGGAAGAGCTACTG
GCATAAGCTCTGTCAATGCTGAAATTATGGAGGGCAAGAGGATTTGTGCAAAGAGTAAAGGTGAGAGCTTCTCCATGTCG
AAGATTTGGCAGTGGTCTAATGTGAAGGGCAAGCTGCCAGCTGGTTCAGACAATTGCTCAGAAACGGCGAGTTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24820.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis