Browse Element(s) Details


OsAffx.24824.1.S1_s_at

Description tigr:9630.m05046
TID=OsAffx.24824.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glutaredoxin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5137011/11Glutaredoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51330Os.8525.2.S1_x_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed
LOC_Os02g51330Os.8525.2.S1_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed
LOC_Os02g51330Os.8525.1.S1_at11/112+31426726..31432122RINT-1/TIP-1 family protein, expressed
LOC_Os02g51340OsAffx.3037.1.S1_at11/112+31437069..31437326hypothetical protein
LOC_Os02g51350Os.11474.1.S1_at7/112+31438787..31441850kelch repeat-containing F-box family protein, putative, expressed
LOC_Os02g51360OsAffx.12588.1.S1_at11/112+31444281..31444724hypothetical protein
LOC_Os02g51370OsAffx.24824.1.S1_s_at11/112+31455355..31456975Glutaredoxin family protein, expressed
LOC_Os02g51380OsAffx.12589.1.S1_at11/112+31459335..31459986hypothetical protein
LOC_Os02g51390Os.24562.1.S1_at11/112+31461533..31465667expressed protein
LOC_Os02g51400NANA2+31467100..31477064ATPase, AAA family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24824.1.S1_s_at--990--8111Chr02:31455898..31455922 (25 bp)
GGACTGCTGGGCGACGAAGTCCATC
LOC_Os02g51370
OsAffx.24824.1.S1_s_at--334--4071Chr02:31455887..31455911 (25 bp)
CGACGAAGTCCATCCTACAAGGCTA
LOC_Os02g51370
OsAffx.24824.1.S1_s_at--652--6691Chr02:31455766..31455790 (25 bp)
GTTCGCGGACGGCAGGCACCTGGGT
LOC_Os02g51370
OsAffx.24824.1.S1_s_at--311--4211Chr02:31455535..31455559 (25 bp)
CCCCGACTGCAACGAGAATGGGCTC
LOC_Os02g51370
OsAffx.24824.1.S1_s_at--615--1471Chr02:31455521..31455545 (25 bp)
AGAATGGGCTCGTGCGCTGCCCGCT
LOC_Os02g51370
OsAffx.24824.1.S1_s_at--61--9171Chr02:31455504..31455528 (25 bp)
TGCCCGCTTTGCTGAAAATCTCGAG
LOC_Os02g51370
OsAffx.24824.1.S1_s_at--128--3991Chr02:31455471..31455495 (25 bp)
CGGGATCTGTAGTGTGATTTTGTGA
LOC_Os02g51370
OsAffx.24824.1.S1_s_at--269--171Chr02:31455455..31455479 (25 bp)
ATTTTGTGAGATGCTTGAGGGTGTT
LOC_Os02g51370
OsAffx.24824.1.S1_s_at--669--6631Chr02:31455433..31455457 (25 bp)
GTTGTGTTAGCGTAGAACGTGTACA
LOC_Os02g51370
OsAffx.24824.1.S1_s_at--189--7611Chr02:31455407..31455431 (25 bp)
GGGAATTACACGACTGTTTCATACT
LOC_Os02g51370
OsAffx.24824.1.S1_s_at--791--1851Chr02:31455398..31455422 (25 bp)
ACGACTGTTTCATACTAGGACTGAT
LOC_Os02g51370
Target Sequence 
GGACTGCTGGGCGACGAAGTCCATCCTACAAGGCTACGGCGTGCTCGTCGACGAGCGCGACCTGTCGATGCACGCCGGGT
TCAAGGAGGAGCTCCACGCCGCGCTGGGCGCGCCGGGCAGCCTCCCGCAGGTGTTCGCGGACGGCAGGCACCTGGGTGGC
GCCGAGGAGGTCCGCCGCATGCACGAGTCCGGGGAGCTGTCCAAGGCGCTGGGCGACTGCGAGATGGCGCCGCCGGCCGC
CGCGGGCAAGGGCATTGCGCTGGACGCGTGCTCCGGCTGCGGCGGCGTCCGGTTCGTGCCGTGCGAGGAGTGCTCCGGCA
GCTGCAAGGTGTTCCTCGAGGAGCTGGACACCTTCCGGCGCTGCCCCGACTGCAACGAGAATGGGCTCGTGCGCTGCCCG
CTTTGCTGAAAATCTCGAGCTTTTTTGCGGGATCTGTAGTGTGATTTTGTGAGATGCTTGAGGGTGTTGTGTTAGCGTAG
AACGTGTACAGGGGAATTACACGACTGTTTCATACTAGGACTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24824.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis