Browse Element(s) Details


OsAffx.24826.1.S1_at

Description tigr:9630.m05066
TID=OsAffx.24826.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5155011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51520NANA2+31546653..31552806retrotransposon protein, putative, unclassified
LOC_Os02g51530Os.31312.5.S1_x_at4/112+31553433..31556693retrotransposon protein, putative, unclassified
LOC_Os02g51530Os.31312.2.S1_x_at3/112+31553433..31556693retrotransposon protein, putative, unclassified
LOC_Os02g51540Os.6133.1.S2_at11/112+31558927..31566094Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g51540Os.6133.1.S1_at11/112+31558927..31566094Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g51550OsAffx.24826.1.S1_at11/112+31570121..31571386expressed protein
LOC_Os02g51560OsAffx.12595.1.S1_at11/112+31573715..31574042hypothetical protein
LOC_Os02g51570Os.11397.1.S1_at11/112+31585352..31587279peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g51580OsAffx.5335.3.S1_x_at11/112+31588693..31589257hypothetical protein
LOC_Os02g51590Os.16735.1.S1_at11/112+31591762..315947662,3-bisphosphoglycerate-dependent phosphoglycerate mutase, putative, expressed
LOC_Os02g51600Os.53144.1.S1_at11/112+31595497..31598522Endonuclease/Exonuclease/phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24826.1.S1_at--723--8351Chr02:31570258..31570282 (25 bp)
GGCGGCGTTCTTGAAGAACTGCGCC
LOC_Os02g51550
OsAffx.24826.1.S1_at--889--4631Chr02:31570262..31570286 (25 bp)
GCGTTCTTGAAGAACTGCGCCCTGT
LOC_Os02g51550
OsAffx.24826.1.S1_at--868--6731Chr02:31570264..31570288 (25 bp)
GTTCTTGAAGAACTGCGCCCTGTGC
LOC_Os02g51550
OsAffx.24826.1.S1_at--62--9591Chr02:31570266..31570290 (25 bp)
TCTTGAAGAACTGCGCCCTGTGCGG
LOC_Os02g51550
OsAffx.24826.1.S1_at--1032--1431Chr02:31570272..31570296 (25 bp)
AGAACTGCGCCCTGTGCGGCCGCGA
LOC_Os02g51550
OsAffx.24826.1.S1_at--346--9451Chr02:31570299..31570323 (25 bp)
TCGGCCCTGGCAAGGACACCTACAT
LOC_Os02g51550
OsAffx.24826.1.S1_at--908--5171Chr02:31571235..31571259 (25 bp)
GCAAGGAGTGCAGGGAGTGTGTGAT
LOC_Os02g51550
OsAffx.24826.1.S1_at--619--7471Chr02:31571251..31571275 (25 bp)
GTGTGTGATCGAGTACTACGAGCGC
LOC_Os02g51550
OsAffx.24826.1.S1_at--195--5191Chr02:31571274..31571298 (25 bp)
GCAAGGAGCGCAATTGCTCCCTCAC
LOC_Os02g51550
OsAffx.24826.1.S1_at--1038--2911Chr02:31571276..31571300 (25 bp)
AAGGAGCGCAATTGCTCCCTCACTT
LOC_Os02g51550
OsAffx.24826.1.S1_at--70--9231Chr02:31571300..31571324 (25 bp)
TCCATCAAGGACACCCCGGCTGTCT
LOC_Os02g51550
Target Sequence 
GGCGGCGTTCTTGAAGAACTGCGCCCTGTGCGGCCGCGACCTCGGCCCTGGCAAGGACACCTACATCTACAGAGGGGAGG
TGGCATTCTGCAGCAAGGAGTGCAGGGAGTGTGTGATCGAGTACTACGAGCGCAAGGAGCGCAATTGCTCCCTCACTTCC
ATCAAGGACACCCCGGCTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24826.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis