Browse Element(s) Details


OsAffx.24894.1.S1_at

Description tigr:9630.m05610
TID=OsAffx.24894.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5652011/11peroxisomal membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56500OsAffx.12667.1.S1_x_at11/112+34590769..34594118expressed protein
LOC_Os02g56500Os.24688.1.S1_x_at11/112+34590769..34594118expressed protein
LOC_Os02g56500Os.24688.1.S1_at10/112+34590769..34594118expressed protein
LOC_Os02g56510Os.6567.1.S1_at11/112+34603539..34609180Phosphate transporter 1, putative, expressed
LOC_Os02g56510Os.51613.1.S1_x_at2/112+34603539..34609180Phosphate transporter 1, putative, expressed
LOC_Os02g56520OsAffx.24894.1.S1_at11/112+34609408..34612854peroxisomal membrane protein, putative, expressed
LOC_Os02g56530Os.47757.1.A1_at11/112+34613990..34617796KE03 protein, putative, expressed
LOC_Os02g56530Os.27744.1.S1_at10/112+34613990..34617796KE03 protein, putative, expressed
LOC_Os02g56540Os.7967.1.S1_at11/112+34626439..34630743Kinesin motor domain containing protein, expressed
LOC_Os02g56550Os.18740.1.S1_at10/112+34632017..34635209ABC transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24894.1.S1_at--298--2711Chr02:34610234..34610258 (25 bp)
AAGCTTTACTGCCTTCATGTGAACA
LOC_Os02g56520
OsAffx.24894.1.S1_at--221--6891Chr02:34609854..34609878 (25 bp)
GTATTTGACTTTCGTGTACCTGCTG
LOC_Os02g56520
OsAffx.24894.1.S1_at--169--6971Chr02:34609839..34609863 (25 bp)
GTACCTGCTGGCATCGGTCTTAAAA
LOC_Os02g56520
OsAffx.24894.1.S1_at--1030--5171Chr02:34609794..34609818 (25 bp)
GCAAGTTCAATCTTCTCACGTGGTG
LOC_Os02g56520
OsAffx.24894.1.S1_at--381--9671Chr02:34609779..34609803 (25 bp)
TCACGTGGTGACTCGGTATTCATTG
LOC_Os02g56520
OsAffx.24894.1.S1_at--117--6671Chr02:34609674..34609698 (25 bp)
GTTGCAACCTATGAGCTACCTGATT
LOC_Os02g56520
OsAffx.24894.1.S1_at--572--7631Chr02:34609573..34609597 (25 bp)
GGGACTATTTGCATTTGACGCCTTT
LOC_Os02g56520
OsAffx.24894.1.S1_at--620--8111Chr02:34609543..34609567 (25 bp)
GGACGGTCAACAAACTTACAGCTTT
LOC_Os02g56520
OsAffx.24894.1.S1_at--402--10491Chr02:34609528..34609552 (25 bp)
TTACAGCTTTGACCGTGGAGCCACT
LOC_Os02g56520
OsAffx.24894.1.S1_at--943--6271Chr02:34609476..34609500 (25 bp)
GATGATTTGTACTGCCCTACATTCG
LOC_Os02g56520
OsAffx.24894.1.S1_at--989--9691Chr02:34609440..34609464 (25 bp)
TCAAGGGTTCTTCTTGTCTCAAGAG
LOC_Os02g56520
Target Sequence 
AAGCTTTACTGCCTTCATGTGAACAACACTGATGCAGAGCTGGGCGGAGGAGTTCGTCAAAGAGTTAGTTCCTGTGAGGT
GGAGGGAAATGATGGTGTTTTTAGCACACAAGAAAGTGTTAATGTATTTGACTTTCGTGTACCTGCTGGCATCGGTCTTA
AAATGGCAAGACATGGTGGTACAGCAAGTTCAATCTTCTCACGTGGTGACTCGGTATTCATTGGGAGCACAGAAGGTAGG
CTGCAAATAAAAGGGGGTCTGAAATCACGAGTTCAGCAATATTCACTGAGAAAGGGAAAGCTTGTTGCAACCTATGAGCT
ACCTGATTTCAATGCCCACTTCCATCACTCTTCAATAACCCAAGTATGGGGCAACTCCAACCTTGTCTTGGCTGCATGTG
GTATGGGACTATTTGCATTTGACGCCTTTAAGGAGGACGGTCAACAAACTTACAGCTTTGACCGTGGAGCCACTCTTGGA
GTAAGAGAGGCTATTGGCTTTGATGATTTGTACTGCCCTACATTCGATTACTCGTCATCAAGGGTTCTTCTTGTCTCAAG
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis