Browse Element(s) Details


OsAffx.24912.1.S1_at

Description tigr:9630.m05782
TID=OsAffx.24912.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5795011/11hypothetical protein
LOC_Os10g110121/11hypothetical protein
LOC_Os02g361201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57930Os.27691.1.S1_x_at4/112+35460748..35466204retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g57940Os.53591.1.S1_at11/112+35476075..35478087F-box domain containing protein, expressed
LOC_Os02g57950OsAffx.24912.1.S1_at11/112+35481694..35482183hypothetical protein
LOC_Os02g57960OsAffx.3098.1.S1_at11/112+35492353..35495167Leucine Rich Repeat family protein
LOC_Os02g57960Os.23175.1.S1_at1/112+35492353..35495167Leucine Rich Repeat family protein
LOC_Os02g57970OsAffx.24913.1.S1_at10/112+35495498..35495790hypothetical protein
LOC_Os02g57980Os.26581.1.S1_at11/112+35496214..35501173DEAD/DEAH box helicase family protein, expressed
LOC_Os02g57990Os.9687.1.S1_at11/112+35501294..35505007methionine adenosyltransferase regulatory beta subunit, putative, expressed
LOC_Os02g57990Os.56368.1.S1_at3/112+35501294..35505007methionine adenosyltransferase regulatory beta subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24912.1.S1_at--1138--2914Chr10:5859597..5859617 (21 bp)
AAGGAGATTGGAAGAAATCGGCTCG
LOC_Os10g11012
OsAffx.24912.1.S1_at--355--5591Chr02:35481984..35482059 (25 bp)
GAAATCGGCTCGGTGGATGTAGCAT
LOC_Os02g57950
OsAffx.24912.1.S1_at--690--491Chr02:35481981..35482002 (22 bp)
ATCGGCTCGGTGGATGTAGCATGCA
LOC_Os02g57950
OsAffx.24912.1.S1_at--1057--4791Chr02:35481979..35482001 (23 bp)
GCTCGGTGGATGTAGCATGCACGCA
LOC_Os02g57950
OsAffx.24912.1.S1_at--430--9431Chr02:35481979..35481999 (21 bp)
TCGGTGGATGTAGCATGCACGCAGC
LOC_Os02g57950
OsAffx.24912.1.S1_at--150--8571Chr02:35481907..35481995 (25 bp)
TGGATGTAGCATGCACGCAGCAGCA
LOC_Os02g57950
OsAffx.24912.1.S1_at--475--3631Chr02:35481878..35481902 (25 bp)
CTTCGGTTGGACAGCAGGTTGGGCA
LOC_Os02g57950
OsAffx.24912.1.S1_at--457--8531Chr02:35481871..35481895 (25 bp)
TGGACAGCAGGTTGGGCAGGCGCGC
LOC_Os02g57950
OsAffx.24912.1.S1_at--366--1611Chr02:35481797..35481821 (25 bp)
AGCTGGCGAAGGATCCATCCGAAGG
LOC_Os02g57950
OsAffx.24912.1.S1_at--804--2911Chr02:35481789..35481813 (25 bp)
AAGGATCCATCCGAAGGAGTCCGAC
LOC_Os02g57950
OsAffx.24912.1.S1_at--1001--991Chr02:35481788..35481812 (25 bp)
AGGATCCATCCGAAGGAGTCCGACC
LOC_Os02g57950
Target Sequence 
AAGGAGATTGGAAGAAATCGGCTCGGTGGATGTAGCATGCACGCAGCAGCAGCGGCTTCGGTTGGACAGCAGGTTGGGCA
GGCGCGCGGCTTGCTGGAGCCGGTCCAGGACGTGCGGCGAGAGGAGACCGAGTGCGAGCTGGCGAAGGATCCATCCGAAG
GAGTCCGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24912.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis